TnSeqCorr

Top 10 genes with highest correlation to Rv0231/fadE4:

update plotcorrelationlink to info on gene
Rv1500/- (cc=0.6561) info on Rv1500/-
Rv3397c/phyA (cc=0.6367) info on Rv3397c/phyA
Rv1373/- (cc=0.6293) info on Rv1373/-
Rv0413/mutT3 (cc=0.6135) info on Rv0413/mutT3
Rv1050/- (cc=0.5782) info on Rv1050/-
Rv2390c/- (cc=0.5777) info on Rv2390c/-
Rv0397A/- (cc=0.5773) info on Rv0397A/-
Rv3840/- (cc=0.5647) info on Rv3840/-
Rv3524/- (cc=0.562) info on Rv3524/-
Rv1753c/PPE24 (cc=0.5603) info on Rv1753c/PPE24

Correlation of Rv0231/fadE4 with Rv3840/-

Normalized LFCs for Rv0231/fadE4:
(description and provenance of datasets)
Rv0231/fadE4Rv3840/-
Fe_supp_jason_reseq

-0.27

-0.158

low_pH_jason_reseq

-0.589

-1.121

NO_jason_reseq

0.055

0.129

B6_jason_reseq

-0.164

-0.108

MHCII_jason_reseq

0.242

-0.192

Isoniazid02

-1.326

-0.764

Rifampicin4

-1.993

-0.374

Ethambutol3

-1.448

-0.652

Meropenem3

-0.779

0.43

Vancomycin16

-1.353

-0.584

Rv2680_day32

0.253

0.162

H37Rv_KO_MarP

-0.268

0.182

hypoxia_3wks

0.235

0.191

hypoxia_6wks

0.0

0.311

glycerol

-0.813

-0.032

cholesterol

-0.205

0.119

AJ

0.249

0.21

Bibs02

0.265

0.123

Bibs02c

-0.091

-0.69

BL6

0.279

0.27

BL6a

0.076

-0.059

BXD01

0.244

0.375

BXD010

0.514

0.567

BXD011

0.682

0.188

BXD03

0.517

0.728

BXD04

0.876

0.453

BXD05

0.437

0.83

BXD06

0.504

0.55

BXD07

0.504

0.367

BXD08

0.613

0.353

BXD09

0.403

0.68

CAST

0.484

0.402

CCcont

0.057

-0.058

DS01

0.046

0.05

DS02

0.154

0.537

DS04

0.082

0.233

DS0c

0.074

0.167

GP01

0.696

0.636

GP02

0.201

1.625

GP0c

0.092

0.811

NOD

0.556

0.439

NZO

0.127

-0.095

PWK

0.23

0.323

H37Rv_KO_CtpC

0.157

0.238

H37Rv_KO_CtpD

0.205

0.113

H37Rv_KO_Rv1272

0.607

0.542

H37Rv_KO_SugABC

0.15

0.935

H37Rv_KO_MbtN

0.361

0.526

Trans05

-0.062

-0.102

macrophage_unactivated

-0.044

-0.076

IL1

0.3

-0.208

Rapamycin

0.242

0.47

Tcell

0.091

0.166

GMCSF

0.037

0.111

IFNab

-0.281

0.49

IFNg

0.198

0.2

IFNg_GMCSF1

0.902

0.101

Rv1432_day32

0.189

0.349

Rv1565c_day32

-0.077

0.039

secA2_input

-0.326

0.377

delta_Rv3594

0.024

-0.415

delta_Rv3717

-0.317

0.074

delta_Rv3811

-0.693

-0.164

delta_Rv0954

0.081

-0.225

PonA1

0.031

-0.421

EccD1_KO

-0.181

-0.431

EspI_KO

-0.274

-0.191

PE35_KO

-0.613

-0.537

PPE68_KO

-0.323

-0.576

glycerol2

-0.126

0.314

lignocerate

-0.104

-0.073

oleate

0.113

0.625

phosphatidylcholine

-0.007

0.108

acetate

-0.567

-0.487

glucAc

-0.394

-0.564

Rv0950ko

0.528

0.697

Rv1096ko

0.528

0.0

Rv3684ko

-0.02

0.049

delta_otsA_trehalose

0.0

-1.073