Top 10 genes with highest correlation to Rv0216/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0485/- | (cc=0.7887) | info on Rv0485/- |
| Rv3551/- | (cc=0.7352) | info on Rv3551/- |
| Rv3400/- | (cc=0.7238) | info on Rv3400/- |
| Rv1590/- | (cc=0.7208) | info on Rv1590/- |
| Rv3544c/fadE28 | (cc=0.7126) | info on Rv3544c/fadE28 |
| Rv3868/eccA1 | (cc=0.6988) | info on Rv3868/eccA1 |
| Rv3871/eccCb1 | (cc=0.6982) | info on Rv3871/eccCb1 |
| Rv3498c/mce4B | (cc=0.697) | info on Rv3498c/mce4B |
| Rv1568/bioA | (cc=0.6968) | info on Rv1568/bioA |
| Rv3615c/espC | (cc=0.6918) | info on Rv3615c/espC |
Correlation of Rv0216/- with Rv3551/-
Normalized LFCs for Rv0216/-:
(description and provenance of datasets)
| Rv0216/- | Rv3551/- | |
| Fe_supp_jason_reseq | 0.169 | 0.737 |
| low_pH_jason_reseq | -0.261 | -0.647 |
| NO_jason_reseq | -0.41 | -0.601 |
| B6_jason_reseq | -1.886 | -1.96 |
| MHCII_jason_reseq | -0.627 | -1.726 |
| Isoniazid02 | -0.179 | -0.842 |
| Rifampicin4 | -0.198 | -0.165 |
| Ethambutol3 | 1.648 | -1.515 |
| Meropenem3 | -0.344 | 0.734 |
| Vancomycin16 | -0.194 | -1.008 |
| Rv2680_day32 | -1.042 | -1.788 |
| H37Rv_KO_MarP | 0.169 | 0.246 |
| hypoxia_3wks | 0.0 | 0.08 |
| hypoxia_6wks | 0.092 | -0.693 |
| glycerol | -0.069 | 1.148 |
| cholesterol | -0.91 | -3.657 |
| AJ | -2.301 | -5.857 |
| Bibs02 | 0.232 | -4.616 |
| Bibs02c | -0.852 | -5.282 |
| BL6 | -1.355 | -2.92 |
| BL6a | -1.964 | -5.001 |
| BXD01 | -1.082 | -3.288 |
| BXD010 | -0.136 | -2.306 |
| BXD011 | -0.88 | -2.59 |
| BXD03 | -0.768 | -3.28 |
| BXD04 | -1.028 | -2.999 |
| BXD05 | -1.335 | -3.029 |
| BXD06 | -0.683 | -3.37 |
| BXD07 | -0.957 | -3.496 |
| BXD08 | -0.835 | -3.226 |
| BXD09 | -1.168 | -3.408 |
| CAST | -1.592 | -4.838 |
| CCcont | 0.683 | -0.733 |
| DS01 | -2.146 | -5.963 |
| DS02 | -1.649 | -5.49 |
| DS04 | -1.924 | -4.367 |
| DS0c | -2.151 | -5.476 |
| GP01 | 0.125 | -2.304 |
| GP02 | -0.381 | -1.942 |
| GP0c | 1.182 | -1.016 |
| NOD | 0.075 | -1.847 |
| NZO | -2.16 | -4.838 |
| PWK | -2.124 | -4.757 |
| H37Rv_KO_CtpC | -1.35 | -3.94 |
| H37Rv_KO_CtpD | -0.183 | -2.576 |
| H37Rv_KO_Rv1272 | -0.886 | -3.56 |
| H37Rv_KO_SugABC | -0.507 | -1.783 |
| H37Rv_KO_MbtN | -0.856 | -1.855 |
| Trans05 | -0.293 | -3.299 |
| macrophage_unactivated | -0.193 | 0.66 |
| IL1 | 0.089 | -1.605 |
| Rapamycin | 0.181 | -1.093 |
| Tcell | -1.098 | -2.209 |
| GMCSF | 0.721 | 0.752 |
| IFNab | -0.184 | 2.283 |
| IFNg | 0.307 | -0.249 |
| IFNg_GMCSF1 | -1.304 | -0.606 |
| Rv1432_day32 | -3.086 | -3.863 |
| Rv1565c_day32 | -2.756 | -3.884 |
| secA2_input | 0.798 | -0.54 |
| delta_Rv3594 | -0.147 | -0.26 |
| delta_Rv3717 | 0.507 | 0.191 |
| delta_Rv3811 | -0.219 | 0.556 |
| delta_Rv0954 | 0.61 | 1.149 |
| PonA1 | 1.558 | 0.384 |
| EccD1_KO | 1.888 | 1.246 |
| EspI_KO | 0.75 | 0.539 |
| PE35_KO | 1.21 | 1.105 |
| PPE68_KO | 0.579 | 1.139 |
| glycerol2 | -0.338 | 0.289 |
| lignocerate | 0.066 | 0.785 |
| oleate | 0.549 | -0.537 |
| phosphatidylcholine | 0.15 | -0.106 |
| acetate | 0.178 | 2.234 |
| glucAc | 0.4 | 1.052 |
| Rv0950ko | -0.416 | 1.903 |
| Rv1096ko | 0.287 | 0.329 |
| Rv3684ko | 1.385 | 0.092 |
| delta_otsA_trehalose | 1.893 | 0.325 |