Top 10 genes with highest correlation to Rv0124/PE_PGRS2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0620/galK | (cc=0.4403) | info on Rv0620/galK |
| Rv0094c/- | (cc=0.424) | info on Rv0094c/- |
| Rv0279c/PE_PGRS4 | (cc=0.42) | info on Rv0279c/PE_PGRS4 |
| Rv0578c/PE_PGRS7 | (cc=0.4139) | info on Rv0578c/PE_PGRS7 |
| Rv3467/- | (cc=0.4137) | info on Rv3467/- |
| Rv1091/PE_PGRS22 | (cc=0.4132) | info on Rv1091/PE_PGRS22 |
| Rv3345c/PE_PGRS50 | (cc=0.4093) | info on Rv3345c/PE_PGRS50 |
| Rv0393/- | (cc=0.4032) | info on Rv0393/- |
| Rv1818c/PE_PGRS33 | (cc=0.4028) | info on Rv1818c/PE_PGRS33 |
| Rv1468c/PE_PGRS29 | (cc=0.4008) | info on Rv1468c/PE_PGRS29 |
Correlation of Rv0124/PE_PGRS2 with Rv0620/galK
Normalized LFCs for Rv0124/PE_PGRS2:
(description and provenance of datasets)
| Rv0124/PE_PGRS2 | Rv0620/galK | |
| Fe_supp_jason_reseq | -0.627 | -3.531 |
| low_pH_jason_reseq | -0.284 | -0.1 |
| NO_jason_reseq | -0.525 | -0.039 |
| B6_jason_reseq | -0.542 | -0.749 |
| MHCII_jason_reseq | -0.477 | -0.778 |
| Isoniazid02 | -0.535 | 0.154 |
| Rifampicin4 | 0.671 | 1.075 |
| Ethambutol3 | 1.019 | 3.874 |
| Meropenem3 | 0.26 | 0.373 |
| Vancomycin16 | 0.048 | 0.048 |
| Rv2680_day32 | -0.183 | 0.19 |
| H37Rv_KO_MarP | -0.109 | 0.181 |
| hypoxia_3wks | -0.407 | -1.176 |
| hypoxia_6wks | -1.155 | -1.771 |
| glycerol | 0.674 | 1.774 |
| cholesterol | -0.4 | -1.049 |
| AJ | 0.59 | 0.212 |
| Bibs02 | 0.874 | -0.183 |
| Bibs02c | 0.239 | 0.097 |
| BL6 | -0.502 | -0.337 |
| BL6a | -0.156 | -0.198 |
| BXD01 | 1.066 | 0.278 |
| BXD010 | -0.764 | -0.928 |
| BXD011 | -0.232 | -0.062 |
| BXD03 | -0.107 | 0.0 |
| BXD04 | 0.726 | 0.6 |
| BXD05 | 0.55 | -0.74 |
| BXD06 | -0.478 | -0.28 |
| BXD07 | 0.566 | -0.213 |
| BXD08 | 0.459 | -0.533 |
| BXD09 | 0.062 | 0.128 |
| CAST | 0.325 | 2.07 |
| CCcont | 0.15 | 0.633 |
| DS01 | 0.139 | 0.505 |
| DS02 | 0.797 | 1.626 |
| DS04 | 1.285 | -0.298 |
| DS0c | -0.556 | -1.024 |
| GP01 | 0.393 | 0.783 |
| GP02 | 1.174 | 0.326 |
| GP0c | 0.682 | 1.43 |
| NOD | 0.132 | -0.109 |
| NZO | 1.591 | -0.799 |
| PWK | 0.0 | 0.091 |
| H37Rv_KO_CtpC | 1.26 | -0.249 |
| H37Rv_KO_CtpD | -0.657 | 0.537 |
| H37Rv_KO_Rv1272 | 0.701 | 0.881 |
| H37Rv_KO_SugABC | -1.391 | -0.817 |
| H37Rv_KO_MbtN | -0.369 | -0.747 |
| Trans05 | 0.0 | 2.405 |
| macrophage_unactivated | -0.11 | 0.35 |
| IL1 | -0.377 | -0.175 |
| Rapamycin | 0.0 | -0.773 |
| Tcell | -0.87 | 0.0 |
| GMCSF | -0.092 | 0.293 |
| IFNab | -1.203 | 0.336 |
| IFNg | 0.756 | 1.072 |
| IFNg_GMCSF1 | -0.644 | 0.512 |
| Rv1432_day32 | 0.205 | 0.713 |
| Rv1565c_day32 | 0.036 | 0.193 |
| secA2_input | 1.393 | 1.655 |
| delta_Rv3594 | 0.454 | 1.981 |
| delta_Rv3717 | 0.03 | 2.475 |
| delta_Rv3811 | 0.158 | 1.387 |
| delta_Rv0954 | 0.062 | 1.603 |
| PonA1 | 1.196 | 1.556 |
| EccD1_KO | -0.164 | -1.325 |
| EspI_KO | -1.657 | -2.036 |
| PE35_KO | -0.939 | 0.201 |
| PPE68_KO | -0.413 | 0.63 |
| glycerol2 | -0.128 | 1.131 |
| lignocerate | -0.055 | 1.712 |
| oleate | -0.043 | -1.045 |
| phosphatidylcholine | -0.41 | 0.95 |
| acetate | 0.768 | 1.835 |
| glucAc | 0.117 | 1.687 |
| Rv0950ko | 0.766 | 0.748 |
| Rv1096ko | 0.866 | 1.285 |
| Rv3684ko | 1.755 | 0.285 |
| delta_otsA_trehalose | 0.683 | 0.416 |