Top 10 genes with highest correlation to Rv0090/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1182/papA3 | (cc=0.5731) | info on Rv1182/papA3 |
| Rv1676/- | (cc=0.5581) | info on Rv1676/- |
| Rv0089/- | (cc=0.5457) | info on Rv0089/- |
| Rv0849/- | (cc=0.5165) | info on Rv0849/- |
| Rv1180/pks3 | (cc=0.5118) | info on Rv1180/pks3 |
| Rv3607c/folB | (cc=0.5102) | info on Rv3607c/folB |
| Rv1734c/- | (cc=0.5095) | info on Rv1734c/- |
| Rv2015c/- | (cc=0.5088) | info on Rv2015c/- |
| Rv2105/- | (cc=0.5086) | info on Rv2105/- |
| Rv0079/- | (cc=0.4961) | info on Rv0079/- |
Correlation of Rv0090/- with Rv1676/-
Normalized LFCs for Rv0090/-:
(description and provenance of datasets)
| Rv0090/- | Rv1676/- | |
| Fe_supp_jason_reseq | -0.418 | -0.818 |
| low_pH_jason_reseq | 0.177 | 0.34 |
| NO_jason_reseq | 0.36 | 0.533 |
| B6_jason_reseq | -0.075 | -0.411 |
| MHCII_jason_reseq | 0.971 | 0.103 |
| Isoniazid02 | -0.035 | 0.268 |
| Rifampicin4 | -0.336 | 0.726 |
| Ethambutol3 | 0.423 | 0.039 |
| Meropenem3 | 0.252 | 0.803 |
| Vancomycin16 | 0.448 | 0.99 |
| Rv2680_day32 | -0.388 | -0.393 |
| H37Rv_KO_MarP | 0.226 | 1.507 |
| hypoxia_3wks | -0.064 | 0.0 |
| hypoxia_6wks | -0.102 | 0.808 |
| glycerol | -0.66 | 1.181 |
| cholesterol | -0.591 | -0.118 |
| AJ | 0.382 | 1.062 |
| Bibs02 | -0.566 | 0.138 |
| Bibs02c | 0.014 | 0.85 |
| BL6 | -0.785 | -0.138 |
| BL6a | -0.27 | 0.502 |
| BXD01 | -0.847 | -0.695 |
| BXD010 | 0.04 | -0.8 |
| BXD011 | -1.232 | -0.34 |
| BXD03 | -0.372 | -1.209 |
| BXD04 | -0.016 | -0.508 |
| BXD05 | -1.01 | -0.148 |
| BXD06 | -0.733 | -1.465 |
| BXD07 | -0.452 | -0.865 |
| BXD08 | -1.445 | -1.794 |
| BXD09 | -0.849 | -1.256 |
| CAST | 0.526 | 0.853 |
| CCcont | -0.726 | 0.285 |
| DS01 | 0.015 | 1.381 |
| DS02 | 0.884 | 2.105 |
| DS04 | 0.586 | 0.753 |
| DS0c | 0.603 | 1.425 |
| GP01 | 0.215 | -0.527 |
| GP02 | -0.95 | 0.603 |
| GP0c | -0.186 | 0.16 |
| NOD | 0.558 | -0.381 |
| NZO | 0.025 | 0.587 |
| PWK | 0.961 | -0.053 |
| H37Rv_KO_CtpC | -1.765 | 0.309 |
| H37Rv_KO_CtpD | 0.476 | 2.042 |
| H37Rv_KO_Rv1272 | -0.366 | 1.968 |
| H37Rv_KO_SugABC | 0.398 | 1.851 |
| H37Rv_KO_MbtN | 0.311 | 1.596 |
| Trans05 | 0.033 | 1.077 |
| macrophage_unactivated | -0.947 | -1.502 |
| IL1 | -0.97 | -2.966 |
| Rapamycin | -1.728 | -3.069 |
| Tcell | -0.935 | -2.704 |
| GMCSF | -0.391 | -2.64 |
| IFNab | -0.342 | -3.607 |
| IFNg | -1.256 | -3.188 |
| IFNg_GMCSF1 | -1.574 | -2.13 |
| Rv1432_day32 | 0.394 | 1.46 |
| Rv1565c_day32 | 0.404 | 0.36 |
| secA2_input | -0.485 | -0.568 |
| delta_Rv3594 | 0.364 | -0.396 |
| delta_Rv3717 | -0.257 | -0.615 |
| delta_Rv3811 | 0.596 | -1.981 |
| delta_Rv0954 | 0.597 | 0.194 |
| PonA1 | -0.407 | 0.386 |
| EccD1_KO | 0.21 | 1.168 |
| EspI_KO | -0.16 | 1.372 |
| PE35_KO | 0.423 | 1.607 |
| PPE68_KO | 0.8 | 1.302 |
| glycerol2 | -0.238 | 0.581 |
| lignocerate | 0.259 | 0.843 |
| oleate | -1.034 | -0.163 |
| phosphatidylcholine | -0.592 | 0.542 |
| acetate | -0.038 | 1.15 |
| glucAc | 0.985 | 1.052 |
| Rv0950ko | -0.703 | -1.33 |
| Rv1096ko | 0.467 | 0.075 |
| Rv3684ko | 0.065 | 0.0 |
| delta_otsA_trehalose | -0.75 | -0.232 |