Top 10 genes with highest correlation to Rv0090/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1182/papA3 | (cc=0.5731) | info on Rv1182/papA3 |
| Rv1676/- | (cc=0.5581) | info on Rv1676/- |
| Rv0089/- | (cc=0.5457) | info on Rv0089/- |
| Rv0849/- | (cc=0.5165) | info on Rv0849/- |
| Rv1180/pks3 | (cc=0.5118) | info on Rv1180/pks3 |
| Rv3607c/folB | (cc=0.5102) | info on Rv3607c/folB |
| Rv1734c/- | (cc=0.5095) | info on Rv1734c/- |
| Rv2015c/- | (cc=0.5088) | info on Rv2015c/- |
| Rv2105/- | (cc=0.5086) | info on Rv2105/- |
| Rv0079/- | (cc=0.4961) | info on Rv0079/- |
Correlation of Rv0090/- with Rv1182/papA3
Normalized LFCs for Rv0090/-:
(description and provenance of datasets)
| Rv0090/- | Rv1182/papA3 | |
| Fe_supp_jason_reseq | -0.418 | 0.169 |
| low_pH_jason_reseq | 0.177 | 0.915 |
| NO_jason_reseq | 0.36 | 0.478 |
| B6_jason_reseq | -0.075 | 1.789 |
| MHCII_jason_reseq | 0.971 | 1.842 |
| Isoniazid02 | -0.035 | 0.332 |
| Rifampicin4 | -0.336 | 0.0 |
| Ethambutol3 | 0.423 | 1.685 |
| Meropenem3 | 0.252 | -0.025 |
| Vancomycin16 | 0.448 | 0.212 |
| Rv2680_day32 | -0.388 | -0.193 |
| H37Rv_KO_MarP | 0.226 | 0.574 |
| hypoxia_3wks | -0.064 | -0.69 |
| hypoxia_6wks | -0.102 | -0.422 |
| glycerol | -0.66 | -0.038 |
| cholesterol | -0.591 | 0.461 |
| AJ | 0.382 | 0.197 |
| Bibs02 | -0.566 | 0.356 |
| Bibs02c | 0.014 | -0.136 |
| BL6 | -0.785 | -1.421 |
| BL6a | -0.27 | -1.221 |
| BXD01 | -0.847 | -1.839 |
| BXD010 | 0.04 | -0.665 |
| BXD011 | -1.232 | -1.4 |
| BXD03 | -0.372 | -1.347 |
| BXD04 | -0.016 | -1.975 |
| BXD05 | -1.01 | -1.256 |
| BXD06 | -0.733 | -1.566 |
| BXD07 | -0.452 | -1.599 |
| BXD08 | -1.445 | -1.241 |
| BXD09 | -0.849 | -1.4 |
| CAST | 0.526 | 0.155 |
| CCcont | -0.726 | -1.219 |
| DS01 | 0.015 | 0.385 |
| DS02 | 0.884 | 0.271 |
| DS04 | 0.586 | 0.756 |
| DS0c | 0.603 | 0.245 |
| GP01 | 0.215 | -1.394 |
| GP02 | -0.95 | -1.579 |
| GP0c | -0.186 | -1.63 |
| NOD | 0.558 | 0.952 |
| NZO | 0.025 | 0.013 |
| PWK | 0.961 | 0.668 |
| H37Rv_KO_CtpC | -1.765 | -0.624 |
| H37Rv_KO_CtpD | 0.476 | -1.918 |
| H37Rv_KO_Rv1272 | -0.366 | -0.952 |
| H37Rv_KO_SugABC | 0.398 | -0.837 |
| H37Rv_KO_MbtN | 0.311 | 0.122 |
| Trans05 | 0.033 | 0.191 |
| macrophage_unactivated | -0.947 | -2.039 |
| IL1 | -0.97 | -0.718 |
| Rapamycin | -1.728 | -0.967 |
| Tcell | -0.935 | -2.105 |
| GMCSF | -0.391 | -1.41 |
| IFNab | -0.342 | -1.953 |
| IFNg | -1.256 | -2.793 |
| IFNg_GMCSF1 | -1.574 | -1.609 |
| Rv1432_day32 | 0.394 | -0.508 |
| Rv1565c_day32 | 0.404 | 0.088 |
| secA2_input | -0.485 | 0.0 |
| delta_Rv3594 | 0.364 | 0.502 |
| delta_Rv3717 | -0.257 | -0.268 |
| delta_Rv3811 | 0.596 | 0.827 |
| delta_Rv0954 | 0.597 | 0.24 |
| PonA1 | -0.407 | -0.067 |
| EccD1_KO | 0.21 | 0.207 |
| EspI_KO | -0.16 | 0.75 |
| PE35_KO | 0.423 | 1.21 |
| PPE68_KO | 0.8 | 1.011 |
| glycerol2 | -0.238 | 0.518 |
| lignocerate | 0.259 | 0.728 |
| oleate | -1.034 | 0.071 |
| phosphatidylcholine | -0.592 | 0.171 |
| acetate | -0.038 | -0.153 |
| glucAc | 0.985 | -0.356 |
| Rv0950ko | -0.703 | -1.152 |
| Rv1096ko | 0.467 | -0.959 |
| Rv3684ko | 0.065 | -1.624 |
| delta_otsA_trehalose | -0.75 | -0.651 |