Top 10 genes with highest correlation to Rv0087/hycE:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0945/- | (cc=0.5258) | info on Rv0945/- |
| Rv2632c/- | (cc=0.5227) | info on Rv2632c/- |
| Rv1751/- | (cc=0.4746) | info on Rv1751/- |
| Rv1237/sugB | (cc=0.4581) | info on Rv1237/sugB |
| Rv2475c/- | (cc=0.4189) | info on Rv2475c/- |
| Rv0690c/- | (cc=0.4174) | info on Rv0690c/- |
| Rv2085/- | (cc=0.4144) | info on Rv2085/- |
| Rv3553/- | (cc=0.414) | info on Rv3553/- |
| Rv3036c/TB22.2 | (cc=0.4093) | info on Rv3036c/TB22.2 |
| Rv2237/- | (cc=0.4086) | info on Rv2237/- |
Correlation of Rv0087/hycE with Rv2475c/-
Normalized LFCs for Rv0087/hycE:
(description and provenance of datasets)
| Rv0087/hycE | Rv2475c/- | |
| Fe_supp_jason_reseq | -0.805 | -0.982 |
| low_pH_jason_reseq | 0.669 | 0.283 |
| NO_jason_reseq | -0.806 | -5.224 |
| B6_jason_reseq | -1.289 | -3.595 |
| MHCII_jason_reseq | -1.136 | -1.986 |
| Isoniazid02 | -0.1 | -0.611 |
| Rifampicin4 | -0.482 | -0.707 |
| Ethambutol3 | -0.216 | -1.53 |
| Meropenem3 | 0.19 | -2.11 |
| Vancomycin16 | 0.422 | -0.743 |
| Rv2680_day32 | 1.605 | -3.788 |
| H37Rv_KO_MarP | 0.0 | 0.442 |
| hypoxia_3wks | 0.63 | 0.335 |
| hypoxia_6wks | 0.113 | -0.382 |
| glycerol | 0.721 | -2.036 |
| cholesterol | 0.108 | -0.89 |
| AJ | 0.56 | -2.588 |
| Bibs02 | -1.0 | -0.715 |
| Bibs02c | 0.44 | -2.236 |
| BL6 | 1.227 | -0.885 |
| BL6a | 0.416 | -1.832 |
| BXD01 | -0.051 | -0.607 |
| BXD010 | 0.742 | -0.688 |
| BXD011 | -0.213 | -1.797 |
| BXD03 | -0.053 | -1.197 |
| BXD04 | 0.178 | 0.047 |
| BXD05 | 0.239 | -1.545 |
| BXD06 | 0.192 | -1.386 |
| BXD07 | 0.2 | -0.921 |
| BXD08 | 0.963 | -1.794 |
| BXD09 | 0.463 | -1.281 |
| CAST | -0.385 | -1.758 |
| CCcont | 1.166 | 0.752 |
| DS01 | -0.621 | -2.152 |
| DS02 | -0.922 | -1.763 |
| DS04 | -0.156 | -2.195 |
| DS0c | 0.0 | -2.065 |
| GP01 | 0.55 | -0.732 |
| GP02 | -0.353 | -1.911 |
| GP0c | 0.097 | -1.151 |
| NOD | -1.715 | -3.267 |
| NZO | 0.657 | -2.323 |
| PWK | -1.073 | -1.867 |
| H37Rv_KO_CtpC | 0.288 | -1.736 |
| H37Rv_KO_CtpD | -0.612 | -1.012 |
| H37Rv_KO_Rv1272 | 0.424 | -0.998 |
| H37Rv_KO_SugABC | 0.208 | -1.485 |
| H37Rv_KO_MbtN | 0.946 | 1.143 |
| Trans05 | 1.991 | -1.762 |
| macrophage_unactivated | 0.511 | 0.36 |
| IL1 | -0.104 | -0.489 |
| Rapamycin | 0.104 | 0.497 |
| Tcell | -0.114 | -0.733 |
| GMCSF | -0.38 | -1.927 |
| IFNab | 0.302 | 0.067 |
| IFNg | -0.703 | -2.403 |
| IFNg_GMCSF1 | 0.314 | -1.678 |
| Rv1432_day32 | -0.368 | -3.601 |
| Rv1565c_day32 | -0.415 | -1.148 |
| secA2_input | 0.0 | 1.331 |
| delta_Rv3594 | 0.389 | 0.054 |
| delta_Rv3717 | 0.135 | -0.497 |
| delta_Rv3811 | 0.0 | -0.345 |
| delta_Rv0954 | 1.022 | 0.176 |
| PonA1 | 0.675 | 1.432 |
| EccD1_KO | 0.0 | -0.151 |
| EspI_KO | 1.275 | 1.027 |
| PE35_KO | 1.21 | 0.683 |
| PPE68_KO | 1.632 | 0.918 |
| glycerol2 | 0.392 | 1.014 |
| lignocerate | 0.91 | 1.396 |
| oleate | -0.403 | -0.194 |
| phosphatidylcholine | 0.332 | 1.217 |
| acetate | 1.531 | 1.019 |
| glucAc | 1.186 | 0.892 |
| Rv0950ko | -0.691 | 0.799 |
| Rv1096ko | 1.022 | 0.872 |
| Rv3684ko | 0.269 | 1.32 |
| delta_otsA_trehalose | 0.062 | 0.871 |