TnSeqCorr

Top 10 genes with highest correlation to Rv0079/-:

update plotcorrelationlink to info on gene
Rv2474c/- (cc=0.6943) info on Rv2474c/-
Rv1160/mutT2 (cc=0.6827) info on Rv1160/mutT2
Rv0228/- (cc=0.6357) info on Rv0228/-
Rv1070c/echA8 (cc=0.6356) info on Rv1070c/echA8
Rv3538/- (cc=0.6105) info on Rv3538/-
Rv1323/fadA4 (cc=0.6103) info on Rv1323/fadA4
Rv2681/- (cc=0.6072) info on Rv2681/-
Rv0428c/- (cc=0.6006) info on Rv0428c/-
Rv0984/moaB2 (cc=0.5977) info on Rv0984/moaB2
Rv3354/- (cc=0.5933) info on Rv3354/-

Correlation of Rv0079/- with Rv0984/moaB2

Normalized LFCs for Rv0079/-:
(description and provenance of datasets)
Rv0079/-Rv0984/moaB2
Fe_supp_jason_reseq

0.786

2.846

low_pH_jason_reseq

-0.656

-0.428

NO_jason_reseq

-3.499

0.0

B6_jason_reseq

-0.146

1.747

MHCII_jason_reseq

-0.022

1.01

Isoniazid02

-0.172

0.298

Rifampicin4

0.295

-0.152

Ethambutol3

-0.063

-0.098

Meropenem3

0.273

0.41

Vancomycin16

0.289

-0.021

Rv2680_day32

-1.975

1.149

H37Rv_KO_MarP

0.454

0.793

hypoxia_3wks

-1.667

0.411

hypoxia_6wks

0.155

-0.071

glycerol

0.554

0.503

cholesterol

0.54

-0.114

AJ

-0.837

-0.044

Bibs02

-0.076

0.181

Bibs02c

0.265

-0.52

BL6

-1.84

-0.782

BL6a

-1.356

-0.903

BXD01

-1.657

-0.844

BXD010

-1.017

-1.868

BXD011

-2.414

-1.407

BXD03

-0.69

-1.531

BXD04

-1.119

-1.169

BXD05

-1.056

-1.475

BXD06

-1.678

-1.463

BXD07

-0.972

-1.256

BXD08

-1.957

-1.544

BXD09

-1.809

-1.296

CAST

0.245

-0.15

CCcont

-0.948

-1.719

DS01

-0.763

-0.352

DS02

-0.651

0.113

DS04

-0.534

0.114

DS0c

-0.636

0.203

GP01

-0.476

-1.833

GP02

-1.224

0.673

GP0c

-0.846

-1.831

NOD

0.988

0.104

NZO

-0.597

-0.998

PWK

-0.165

-0.558

H37Rv_KO_CtpC

-1.004

-0.693

H37Rv_KO_CtpD

-0.481

-3.93

H37Rv_KO_Rv1272

-0.406

-0.317

H37Rv_KO_SugABC

-0.436

-2.356

H37Rv_KO_MbtN

-0.723

0.035

Trans05

-1.393

-1.69

macrophage_unactivated

-2.326

-5.3

IL1

-1.326

-4.663

Rapamycin

-1.43

-3.652

Tcell

-2.998

-4.493

GMCSF

-2.36

-3.44

IFNab

-1.862

-5.424

IFNg

-4.022

-4.525

IFNg_GMCSF1

-3.098

-5.455

Rv1432_day32

-0.272

0.107

Rv1565c_day32

0.986

-1.003

secA2_input

0.0

0.98

delta_Rv3594

0.815

1.355

delta_Rv3717

-0.327

-1.133

delta_Rv3811

0.433

0.385

delta_Rv0954

1.545

1.774

PonA1

0.795

0.871

EccD1_KO

-0.148

0.339

EspI_KO

-0.148

1.743

PE35_KO

-1.009

0.823

PPE68_KO

-0.598

1.83

glycerol2

0.427

0.811

lignocerate

0.111

-0.329

oleate

-0.403

-0.216

phosphatidylcholine

0.232

0.494

acetate

0.223

-0.574

glucAc

0.99

-1.251

Rv0950ko

0.703

-0.654

Rv1096ko

1.188

-1.372

Rv3684ko

0.364

-0.321

delta_otsA_trehalose

0.386

0.407