TnSeqCorr

Top 10 genes with highest correlation to Rv0060/-:

update plotcorrelationlink to info on gene
Rv2219/- (cc=0.5267) info on Rv2219/-
Rv0945/- (cc=0.526) info on Rv0945/-
Rv3819/- (cc=0.5134) info on Rv3819/-
Rv2237/- (cc=0.5052) info on Rv2237/-
Rv3224B/- (cc=0.5046) info on Rv3224B/-
Rv3224A/- (cc=0.5002) info on Rv3224A/-
Rv0312/- (cc=0.4982) info on Rv0312/-
Rv1987/- (cc=0.4959) info on Rv1987/-
Rv0887c/- (cc=0.486) info on Rv0887c/-
Rv3217c/- (cc=0.4839) info on Rv3217c/-

Correlation of Rv0060/- with Rv1987/-

Normalized LFCs for Rv0060/-:
(description and provenance of datasets)
Rv0060/-Rv1987/-
Fe_supp_jason_reseq

0.391

0.813

low_pH_jason_reseq

-1.134

-0.965

NO_jason_reseq

0.0

-0.761

B6_jason_reseq

0.0

0.082

MHCII_jason_reseq

0.085

-0.367

Isoniazid02

0.263

-0.346

Rifampicin4

0.712

-0.709

Ethambutol3

0.505

-0.343

Meropenem3

0.662

-0.765

Vancomycin16

0.48

-0.053

Rv2680_day32

-0.554

0.985

H37Rv_KO_MarP

0.35

-0.008

hypoxia_3wks

-0.606

-1.025

hypoxia_6wks

0.146

-0.265

glycerol

0.222

-0.933

cholesterol

0.0

-0.517

AJ

0.131

-0.679

Bibs02

-1.123

0.878

Bibs02c

0.629

0.697

BL6

0.53

0.885

BL6a

0.595

0.422

BXD01

0.905

0.19

BXD010

-0.543

0.059

BXD011

0.268

0.262

BXD03

0.52

0.478

BXD04

-0.325

0.068

BXD05

0.216

0.698

BXD06

0.342

0.355

BXD07

0.0

0.167

BXD08

0.0

0.438

BXD09

-0.173

0.363

CAST

0.976

-0.289

CCcont

1.498

1.188

DS01

-0.45

0.183

DS02

1.235

-0.072

DS04

0.312

0.572

DS0c

-0.737

-0.083

GP01

0.056

0.187

GP02

-0.283

-0.69

GP0c

0.942

-0.935

NOD

0.0

-0.295

NZO

0.6

-0.767

PWK

0.905

-0.163

H37Rv_KO_CtpC

0.977

0.154

H37Rv_KO_CtpD

0.989

1.731

H37Rv_KO_Rv1272

0.227

0.848

H37Rv_KO_SugABC

0.877

1.386

H37Rv_KO_MbtN

-0.633

-0.315

Trans05

-0.554

0.03

macrophage_unactivated

1.531

0.265

IL1

-0.297

0.409

Rapamycin

0.0

0.69

Tcell

1.352

-0.541

GMCSF

-0.264

0.393

IFNab

0.0

0.242

IFNg

-0.551

0.398

IFNg_GMCSF1

-0.314

0.795

Rv1432_day32

0.0

0.194

Rv1565c_day32

-0.218

0.117

secA2_input

0.812

-0.418

delta_Rv3594

0.961

1.086

delta_Rv3717

1.851

0.703

delta_Rv3811

1.335

0.747

delta_Rv0954

0.0

1.417

PonA1

-0.245

-0.212

EccD1_KO

0.582

-0.615

EspI_KO

-0.787

-0.331

PE35_KO

-0.589

-0.079

PPE68_KO

-1.133

0.214

glycerol2

1.964

2.285

lignocerate

2.404

2.814

oleate

-0.688

-1.163

phosphatidylcholine

1.909

2.129

acetate

2.128

2.72

glucAc

1.868

2.553

Rv0950ko

0.639

0.033

Rv1096ko

1.194

-0.549

Rv3684ko

0.0

-0.416

delta_otsA_trehalose

0.366

0.021