Top 10 genes with highest correlation to Rv0006/gyrA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1736c/narX | (cc=0.6106) | info on Rv1736c/narX |
| Rv1291c/- | (cc=0.5869) | info on Rv1291c/- |
| Rv0965c/- | (cc=0.5729) | info on Rv0965c/- |
| Rv0848/cysK2 | (cc=0.5685) | info on Rv0848/cysK2 |
| Rv1974/- | (cc=0.5655) | info on Rv1974/- |
| Rv2418c/- | (cc=0.5652) | info on Rv2418c/- |
| Rv2032/acg | (cc=0.5459) | info on Rv2032/acg |
| Rv1181/pks4 | (cc=0.5451) | info on Rv1181/pks4 |
| Rv2125/- | (cc=0.5424) | info on Rv2125/- |
| Rv1769/- | (cc=0.5403) | info on Rv1769/- |
Correlation of Rv0006/gyrA with Rv2125/-
Normalized LFCs for Rv0006/gyrA:
(description and provenance of datasets)
| Rv0006/gyrA | Rv2125/- | |
| Fe_supp_jason_reseq | 0.0 | 0.845 |
| low_pH_jason_reseq | 0.0 | -0.231 |
| NO_jason_reseq | 0.0 | -0.11 |
| B6_jason_reseq | 0.85 | 0.428 |
| MHCII_jason_reseq | 1.292 | 0.874 |
| Isoniazid02 | 0.0 | 1.013 |
| Rifampicin4 | 0.374 | -0.171 |
| Ethambutol3 | 0.0 | 0.06 |
| Meropenem3 | 0.165 | 0.159 |
| Vancomycin16 | 0.366 | -0.106 |
| Rv2680_day32 | 0.0 | -0.055 |
| H37Rv_KO_MarP | 0.195 | 0.876 |
| hypoxia_3wks | 0.0 | 0.0 |
| hypoxia_6wks | -0.549 | -0.299 |
| glycerol | -0.282 | 1.122 |
| cholesterol | -0.568 | 0.722 |
| AJ | -0.324 | 0.368 |
| Bibs02 | 0.0 | -0.371 |
| Bibs02c | 0.132 | 0.394 |
| BL6 | -0.614 | -1.865 |
| BL6a | 0.0 | -0.342 |
| BXD01 | -0.64 | -1.648 |
| BXD010 | -0.629 | -1.35 |
| BXD011 | -0.277 | -1.534 |
| BXD03 | -0.664 | -1.12 |
| BXD04 | -0.607 | -1.647 |
| BXD05 | -0.661 | -0.946 |
| BXD06 | -0.656 | -1.222 |
| BXD07 | -0.68 | -1.3 |
| BXD08 | -0.653 | -1.139 |
| BXD09 | -0.69 | -1.068 |
| CAST | -0.501 | -0.661 |
| CCcont | -0.733 | -1.205 |
| DS01 | -0.33 | 0.022 |
| DS02 | -0.147 | -0.391 |
| DS04 | -0.422 | 0.475 |
| DS0c | -0.471 | -0.035 |
| GP01 | -0.297 | 0.67 |
| GP02 | -0.326 | 0.046 |
| GP0c | -0.182 | 0.522 |
| NOD | -0.675 | 0.145 |
| NZO | -0.6 | -0.539 |
| PWK | -0.426 | -0.826 |
| H37Rv_KO_CtpC | -0.227 | -1.043 |
| H37Rv_KO_CtpD | -0.622 | -1.512 |
| H37Rv_KO_Rv1272 | -0.693 | -1.109 |
| H37Rv_KO_SugABC | -0.487 | 0.948 |
| H37Rv_KO_MbtN | -0.506 | 0.311 |
| Trans05 | -0.642 | -1.4 |
| macrophage_unactivated | -0.436 | 0.249 |
| IL1 | -0.409 | -0.024 |
| Rapamycin | -0.424 | 0.43 |
| Tcell | -0.45 | -0.971 |
| GMCSF | 0.0 | 0.042 |
| IFNab | 0.0 | 0.239 |
| IFNg | 0.337 | -0.224 |
| IFNg_GMCSF1 | 0.0 | 0.575 |
| Rv1432_day32 | 0.0 | 0.095 |
| Rv1565c_day32 | 0.0 | 0.485 |
| secA2_input | 0.0 | 0.106 |
| delta_Rv3594 | 0.211 | 0.965 |
| delta_Rv3717 | 0.0 | 1.072 |
| delta_Rv3811 | 0.0 | 1.184 |
| delta_Rv0954 | 0.34 | 1.26 |
| PonA1 | 0.0 | 0.965 |
| EccD1_KO | 0.0 | 0.562 |
| EspI_KO | 0.0 | 0.502 |
| PE35_KO | -0.403 | 0.16 |
| PPE68_KO | -0.442 | 0.474 |
| glycerol2 | -0.193 | -1.033 |
| lignocerate | -0.168 | -0.669 |
| oleate | -0.196 | -0.88 |
| phosphatidylcholine | -0.193 | -0.819 |
| acetate | -0.229 | 0.318 |
| glucAc | -0.143 | 0.0 |
| Rv0950ko | -0.416 | -0.151 |
| Rv1096ko | 0.0 | 0.106 |
| Rv3684ko | 0.0 | -0.747 |
| delta_otsA_trehalose | 0.0 | 0.132 |