Top 10 genes with highest correlation to Rv0006/gyrA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1736c/narX | (cc=0.6106) | info on Rv1736c/narX |
| Rv1291c/- | (cc=0.5869) | info on Rv1291c/- |
| Rv0965c/- | (cc=0.5729) | info on Rv0965c/- |
| Rv0848/cysK2 | (cc=0.5685) | info on Rv0848/cysK2 |
| Rv1974/- | (cc=0.5655) | info on Rv1974/- |
| Rv2418c/- | (cc=0.5652) | info on Rv2418c/- |
| Rv2032/acg | (cc=0.5459) | info on Rv2032/acg |
| Rv1181/pks4 | (cc=0.5451) | info on Rv1181/pks4 |
| Rv2125/- | (cc=0.5424) | info on Rv2125/- |
| Rv1769/- | (cc=0.5403) | info on Rv1769/- |
Correlation of Rv0006/gyrA with Rv0965c/-
Normalized LFCs for Rv0006/gyrA:
(description and provenance of datasets)
| Rv0006/gyrA | Rv0965c/- | |
| Fe_supp_jason_reseq | 0.0 | 0.488 |
| low_pH_jason_reseq | 0.0 | 0.681 |
| NO_jason_reseq | 0.0 | -0.042 |
| B6_jason_reseq | 0.85 | 2.125 |
| MHCII_jason_reseq | 1.292 | 1.421 |
| Isoniazid02 | 0.0 | 0.233 |
| Rifampicin4 | 0.374 | 0.55 |
| Ethambutol3 | 0.0 | -0.01 |
| Meropenem3 | 0.165 | -0.501 |
| Vancomycin16 | 0.366 | 0.406 |
| Rv2680_day32 | 0.0 | -0.883 |
| H37Rv_KO_MarP | 0.195 | 0.357 |
| hypoxia_3wks | 0.0 | 0.0 |
| hypoxia_6wks | -0.549 | -0.685 |
| glycerol | -0.282 | -1.985 |
| cholesterol | -0.568 | 0.3 |
| AJ | -0.324 | -0.18 |
| Bibs02 | 0.0 | -1.134 |
| Bibs02c | 0.132 | 0.112 |
| BL6 | -0.614 | -0.776 |
| BL6a | 0.0 | -1.357 |
| BXD01 | -0.64 | -1.515 |
| BXD010 | -0.629 | -0.572 |
| BXD011 | -0.277 | -1.406 |
| BXD03 | -0.664 | -2.898 |
| BXD04 | -0.607 | -1.991 |
| BXD05 | -0.661 | -1.859 |
| BXD06 | -0.656 | -0.902 |
| BXD07 | -0.68 | -1.529 |
| BXD08 | -0.653 | -3.201 |
| BXD09 | -0.69 | -1.792 |
| CAST | -0.501 | 0.133 |
| CCcont | -0.733 | -2.035 |
| DS01 | -0.33 | 0.257 |
| DS02 | -0.147 | 0.711 |
| DS04 | -0.422 | 1.176 |
| DS0c | -0.471 | -0.262 |
| GP01 | -0.297 | -1.383 |
| GP02 | -0.326 | -0.737 |
| GP0c | -0.182 | -1.213 |
| NOD | -0.675 | -0.683 |
| NZO | -0.6 | -1.183 |
| PWK | -0.426 | -0.583 |
| H37Rv_KO_CtpC | -0.227 | 0.169 |
| H37Rv_KO_CtpD | -0.622 | -0.394 |
| H37Rv_KO_Rv1272 | -0.693 | -0.789 |
| H37Rv_KO_SugABC | -0.487 | -0.072 |
| H37Rv_KO_MbtN | -0.506 | -0.912 |
| Trans05 | -0.642 | -0.515 |
| macrophage_unactivated | -0.436 | -0.773 |
| IL1 | -0.409 | -1.507 |
| Rapamycin | -0.424 | -1.366 |
| Tcell | -0.45 | 0.681 |
| GMCSF | 0.0 | 0.803 |
| IFNab | 0.0 | -1.735 |
| IFNg | 0.337 | 0.118 |
| IFNg_GMCSF1 | 0.0 | -0.446 |
| Rv1432_day32 | 0.0 | -0.299 |
| Rv1565c_day32 | 0.0 | -0.599 |
| secA2_input | 0.0 | 0.114 |
| delta_Rv3594 | 0.211 | -0.093 |
| delta_Rv3717 | 0.0 | 0.559 |
| delta_Rv3811 | 0.0 | 0.833 |
| delta_Rv0954 | 0.34 | -0.119 |
| PonA1 | 0.0 | 0.132 |
| EccD1_KO | 0.0 | -0.526 |
| EspI_KO | 0.0 | -0.622 |
| PE35_KO | -0.403 | -0.948 |
| PPE68_KO | -0.442 | 0.0 |
| glycerol2 | -0.193 | 0.014 |
| lignocerate | -0.168 | -0.133 |
| oleate | -0.196 | 0.696 |
| phosphatidylcholine | -0.193 | 0.0 |
| acetate | -0.229 | -0.773 |
| glucAc | -0.143 | -1.034 |
| Rv0950ko | -0.416 | 0.733 |
| Rv1096ko | 0.0 | 1.33 |
| Rv3684ko | 0.0 | 1.618 |
| delta_otsA_trehalose | 0.0 | -0.147 |