Top 10 genes with highest correlation to Rv3900c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3537/kstD | (cc=0.5508) | info on Rv3537/kstD |
| Rv1729c/- | (cc=0.4953) | info on Rv1729c/- |
| Rv3762c/- | (cc=0.4834) | info on Rv3762c/- |
| Rv0250c/- | (cc=0.4772) | info on Rv0250c/- |
| Rv1059/- | (cc=0.4726) | info on Rv1059/- |
| Rv2929/- | (cc=0.4714) | info on Rv2929/- |
| Rv3429/PPE59 | (cc=0.4696) | info on Rv3429/PPE59 |
| Rv3146/nuoB | (cc=0.4689) | info on Rv3146/nuoB |
| Rv1870c/- | (cc=0.461) | info on Rv1870c/- |
| Rv1207/folP2 | (cc=0.4518) | info on Rv1207/folP2 |
Correlation of Rv3900c/- with Rv3537/kstD
Normalized LFCs for Rv3900c/-:
(description and provenance of datasets)
| Rv3900c/- | Rv3537/kstD | |
| Fe_supp_jason_reseq | -0.406 | -1.077 |
| low_pH_jason_reseq | 0.632 | 0.821 |
| NO_jason_reseq | -0.352 | -0.344 |
| B6_jason_reseq | -0.285 | -2.065 |
| MHCII_jason_reseq | -0.876 | -1.746 |
| Isoniazid02 | -0.226 | -0.044 |
| Rifampicin4 | 0.544 | -0.341 |
| Ethambutol3 | 0.946 | -0.276 |
| Meropenem3 | 1.216 | -0.073 |
| Vancomycin16 | 0.228 | 0.52 |
| Rv2680_day32 | -0.763 | -1.619 |
| H37Rv_KO_MarP | 0.679 | 0.741 |
| hypoxia_3wks | 0.49 | 0.108 |
| hypoxia_6wks | -0.077 | 0.223 |
| glycerol | -0.24 | -0.215 |
| cholesterol | -0.243 | -1.569 |
| AJ | -0.439 | -1.318 |
| Bibs02 | -0.631 | -0.935 |
| Bibs02c | -0.878 | -1.314 |
| BL6 | 0.272 | 0.625 |
| BL6a | -0.105 | -0.445 |
| BXD01 | 0.446 | 0.347 |
| BXD010 | 0.597 | 0.307 |
| BXD011 | 0.116 | 0.436 |
| BXD03 | 0.236 | 0.861 |
| BXD04 | 0.63 | -0.566 |
| BXD05 | 0.225 | 0.249 |
| BXD06 | 0.749 | -0.246 |
| BXD07 | 0.413 | 0.176 |
| BXD08 | 0.497 | -0.092 |
| BXD09 | 0.7 | 0.047 |
| CAST | 0.117 | -0.616 |
| CCcont | 0.838 | 0.398 |
| DS01 | -0.021 | -1.632 |
| DS02 | -0.884 | -0.679 |
| DS04 | 0.748 | -0.519 |
| DS0c | -0.671 | -1.645 |
| GP01 | 0.801 | 0.81 |
| GP02 | -0.257 | -0.426 |
| GP0c | 0.689 | 1.507 |
| NOD | 0.094 | -1.149 |
| NZO | -0.712 | -0.812 |
| PWK | -0.196 | -0.703 |
| H37Rv_KO_CtpC | -0.042 | -0.113 |
| H37Rv_KO_CtpD | 1.454 | -0.088 |
| H37Rv_KO_Rv1272 | 0.336 | -0.098 |
| H37Rv_KO_SugABC | 0.8 | 1.302 |
| H37Rv_KO_MbtN | 0.202 | 0.536 |
| Trans05 | -0.034 | 0.313 |
| macrophage_unactivated | 0.451 | 0.549 |
| IL1 | 0.311 | 0.0 |
| Rapamycin | 0.368 | -0.114 |
| Tcell | -0.137 | -0.375 |
| GMCSF | 0.214 | 0.628 |
| IFNab | 0.339 | 0.813 |
| IFNg | 0.0 | 0.879 |
| IFNg_GMCSF1 | -0.647 | 0.943 |
| Rv1432_day32 | -0.469 | -0.232 |
| Rv1565c_day32 | -0.058 | -1.529 |
| secA2_input | 0.177 | -0.474 |
| delta_Rv3594 | -0.054 | -0.167 |
| delta_Rv3717 | -0.736 | -0.325 |
| delta_Rv3811 | 0.241 | 0.257 |
| delta_Rv0954 | -0.261 | 0.423 |
| PonA1 | -0.07 | -0.159 |
| EccD1_KO | -0.582 | -1.184 |
| EspI_KO | -0.884 | -1.435 |
| PE35_KO | -0.137 | -0.817 |
| PPE68_KO | -0.086 | -0.138 |
| glycerol2 | 0.294 | -0.161 |
| lignocerate | 0.203 | -0.52 |
| oleate | 0.089 | 0.269 |
| phosphatidylcholine | -0.057 | -0.161 |
| acetate | -0.361 | -0.512 |
| glucAc | -0.205 | -0.959 |
| Rv0950ko | 0.109 | -0.374 |
| Rv1096ko | -0.802 | -0.244 |
| Rv3684ko | -0.098 | 0.19 |
| delta_otsA_trehalose | -0.73 | -0.858 |