Top 10 genes with highest correlation to Rv3896c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0134/ephF | (cc=0.5341) | info on Rv0134/ephF |
| Rv0327c/cyp135A1 | (cc=0.5299) | info on Rv0327c/cyp135A1 |
| Rv2405/- | (cc=0.5163) | info on Rv2405/- |
| Rv0379/secE2 | (cc=0.4859) | info on Rv0379/secE2 |
| Rv3786c/- | (cc=0.4801) | info on Rv3786c/- |
| Rv1738/- | (cc=0.4698) | info on Rv1738/- |
| Rv0232/- | (cc=0.4572) | info on Rv0232/- |
| Rv3522/ltp4 | (cc=0.4428) | info on Rv3522/ltp4 |
| Rv2638/- | (cc=0.4398) | info on Rv2638/- |
| Rv0376c/- | (cc=0.4395) | info on Rv0376c/- |
Correlation of Rv3896c/- with Rv0379/secE2
Normalized LFCs for Rv3896c/-:
(description and provenance of datasets)
| Rv3896c/- | Rv0379/secE2 | |
| Fe_supp_jason_reseq | -0.442 | -0.707 |
| low_pH_jason_reseq | -0.291 | -0.32 |
| NO_jason_reseq | 0.21 | 1.197 |
| B6_jason_reseq | 0.071 | -0.727 |
| MHCII_jason_reseq | 0.359 | -0.542 |
| Isoniazid02 | -0.425 | 0.799 |
| Rifampicin4 | -0.103 | 0.046 |
| Ethambutol3 | -0.119 | 1.3 |
| Meropenem3 | -0.229 | 0.272 |
| Vancomycin16 | 0.172 | 0.44 |
| Rv2680_day32 | 0.565 | -0.692 |
| H37Rv_KO_MarP | 0.389 | -0.339 |
| hypoxia_3wks | -0.55 | -1.703 |
| hypoxia_6wks | -0.288 | 0.597 |
| glycerol | -0.48 | 1.29 |
| cholesterol | -0.775 | 0.307 |
| AJ | -0.116 | 0.178 |
| Bibs02 | -1.065 | 0.943 |
| Bibs02c | 0.729 | 0.562 |
| BL6 | 0.319 | -0.753 |
| BL6a | 0.4 | -0.694 |
| BXD01 | -0.628 | -3.242 |
| BXD010 | -0.873 | -1.486 |
| BXD011 | -0.43 | -2.338 |
| BXD03 | -0.664 | -3.193 |
| BXD04 | 0.492 | -2.154 |
| BXD05 | -0.131 | -2.001 |
| BXD06 | -0.481 | -1.712 |
| BXD07 | -0.621 | -3.111 |
| BXD08 | -0.236 | -2.542 |
| BXD09 | -0.343 | -2.019 |
| CAST | -0.265 | -0.552 |
| CCcont | -0.304 | -1.958 |
| DS01 | -0.272 | 0.289 |
| DS02 | 0.011 | 0.159 |
| DS04 | -0.131 | 0.048 |
| DS0c | 0.082 | -0.13 |
| GP01 | 0.159 | -2.055 |
| GP02 | -0.09 | -2.334 |
| GP0c | 0.069 | -2.237 |
| NOD | -0.708 | -0.937 |
| NZO | 0.246 | -0.759 |
| PWK | -0.506 | 0.681 |
| H37Rv_KO_CtpC | -0.548 | -0.505 |
| H37Rv_KO_CtpD | 0.401 | -0.49 |
| H37Rv_KO_Rv1272 | 0.132 | 0.006 |
| H37Rv_KO_SugABC | -0.605 | -2.379 |
| H37Rv_KO_MbtN | -0.317 | -1.646 |
| Trans05 | -0.441 | -0.513 |
| macrophage_unactivated | 0.136 | 0.035 |
| IL1 | -0.053 | -0.392 |
| Rapamycin | 0.433 | -0.365 |
| Tcell | 0.0 | -1.039 |
| GMCSF | 0.137 | -2.521 |
| IFNab | 0.257 | -1.466 |
| IFNg | -0.267 | -1.048 |
| IFNg_GMCSF1 | 1.027 | 2.118 |
| Rv1432_day32 | -1.188 | 0.18 |
| Rv1565c_day32 | -0.494 | -0.085 |
| secA2_input | 0.765 | -1.49 |
| delta_Rv3594 | -0.321 | 0.078 |
| delta_Rv3717 | -0.673 | -1.111 |
| delta_Rv3811 | 0.198 | 0.843 |
| delta_Rv0954 | 0.61 | 1.454 |
| PonA1 | 0.0 | 0.87 |
| EccD1_KO | -0.368 | -0.02 |
| EspI_KO | -0.913 | 0.319 |
| PE35_KO | -0.411 | 0.055 |
| PPE68_KO | -0.813 | 0.32 |
| glycerol2 | 0.506 | 1.188 |
| lignocerate | 0.949 | 2.25 |
| oleate | -0.041 | 0.0 |
| phosphatidylcholine | 0.552 | 1.401 |
| acetate | 0.776 | 3.712 |
| glucAc | 1.004 | 3.12 |
| Rv0950ko | 1.309 | 3.347 |
| Rv1096ko | 1.046 | 2.925 |
| Rv3684ko | 1.235 | 2.689 |
| delta_otsA_trehalose | -1.658 | -1.235 |