Top 10 genes with highest correlation to Rv3835/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3210c/- | (cc=0.6905) | info on Rv3210c/- |
| Rv3146/nuoB | (cc=0.5844) | info on Rv3146/nuoB |
| Rv0734/mapA | (cc=0.5628) | info on Rv0734/mapA |
| Rv3151/nuoG | (cc=0.5471) | info on Rv3151/nuoG |
| Rv3158/nuoN | (cc=0.5462) | info on Rv3158/nuoN |
| Rv1831/- | (cc=0.5447) | info on Rv1831/- |
| Rv0051/- | (cc=0.5373) | info on Rv0051/- |
| Rv1337/- | (cc=0.5279) | info on Rv1337/- |
| Rv2462c/tig | (cc=0.5241) | info on Rv2462c/tig |
| Rv3148/nuoD | (cc=0.5224) | info on Rv3148/nuoD |
Correlation of Rv3835/- with Rv3210c/-
Normalized LFCs for Rv3835/-:
(description and provenance of datasets)
| Rv3835/- | Rv3210c/- | |
| Fe_supp_jason_reseq | 0.175 | 2.062 |
| low_pH_jason_reseq | -1.077 | -3.853 |
| NO_jason_reseq | -0.512 | -2.056 |
| B6_jason_reseq | -1.291 | -1.674 |
| MHCII_jason_reseq | -0.659 | -2.452 |
| Isoniazid02 | 0.425 | -0.351 |
| Rifampicin4 | 1.107 | -0.311 |
| Ethambutol3 | 2.612 | 0.0 |
| Meropenem3 | 0.942 | 0.0 |
| Vancomycin16 | 0.0 | -0.305 |
| Rv2680_day32 | -1.024 | 0.617 |
| H37Rv_KO_MarP | -1.139 | -3.844 |
| hypoxia_3wks | -0.255 | -5.383 |
| hypoxia_6wks | 0.566 | -2.533 |
| glycerol | -0.222 | -0.709 |
| cholesterol | 0.773 | -0.509 |
| AJ | -0.983 | -0.18 |
| Bibs02 | -0.31 | 0.132 |
| Bibs02c | -0.887 | -0.336 |
| BL6 | 1.392 | 2.786 |
| BL6a | 0.228 | 3.965 |
| BXD01 | 1.394 | 4.097 |
| BXD010 | 1.425 | 4.494 |
| BXD011 | 1.952 | 4.043 |
| BXD03 | 2.034 | 2.532 |
| BXD04 | 1.954 | 4.283 |
| BXD05 | 0.852 | 3.297 |
| BXD06 | 1.85 | 4.797 |
| BXD07 | 1.614 | 4.33 |
| BXD08 | 1.519 | 4.103 |
| BXD09 | 1.224 | 4.378 |
| CAST | 0.439 | -0.809 |
| CCcont | 1.345 | 4.389 |
| DS01 | -0.45 | 0.0 |
| DS02 | 1.271 | -0.548 |
| DS04 | -0.034 | 1.97 |
| DS0c | -0.506 | -0.168 |
| GP01 | 0.43 | -0.077 |
| GP02 | 0.617 | 0.116 |
| GP0c | 0.267 | 1.73 |
| NOD | 0.428 | -0.789 |
| NZO | 0.493 | -0.701 |
| PWK | 0.665 | -0.689 |
| H37Rv_KO_CtpC | 0.467 | 1.944 |
| H37Rv_KO_CtpD | 0.26 | 1.545 |
| H37Rv_KO_Rv1272 | -0.102 | 2.512 |
| H37Rv_KO_SugABC | 2.433 | 3.415 |
| H37Rv_KO_MbtN | 2.451 | 5.206 |
| Trans05 | 1.423 | 3.053 |
| macrophage_unactivated | 0.066 | -0.716 |
| IL1 | -0.03 | 0.341 |
| Rapamycin | -0.924 | 0.0 |
| Tcell | -1.61 | -1.619 |
| GMCSF | 0.267 | 0.721 |
| IFNab | 1.134 | 2.283 |
| IFNg | 0.569 | 1.109 |
| IFNg_GMCSF1 | 0.971 | -0.396 |
| Rv1432_day32 | -0.541 | -1.71 |
| Rv1565c_day32 | -1.579 | -3.884 |
| secA2_input | 0.571 | 1.565 |
| delta_Rv3594 | 0.086 | 0.153 |
| delta_Rv3717 | 0.964 | 0.946 |
| delta_Rv3811 | 0.807 | 0.913 |
| delta_Rv0954 | 0.234 | -3.66 |
| PonA1 | -0.398 | -5.488 |
| EccD1_KO | -0.109 | -2.457 |
| EspI_KO | -0.068 | -2.073 |
| PE35_KO | -1.155 | -3.104 |
| PPE68_KO | -0.634 | -3.161 |
| glycerol2 | 0.737 | 0.82 |
| lignocerate | 0.377 | 0.0 |
| oleate | 0.081 | 0.0 |
| phosphatidylcholine | -0.353 | 0.0 |
| acetate | 1.127 | 0.0 |
| glucAc | 0.91 | 0.392 |
| Rv0950ko | -0.202 | -0.214 |
| Rv1096ko | 0.431 | 0.178 |
| Rv3684ko | 0.891 | 0.635 |
| delta_otsA_trehalose | -0.228 | 0.0 |