Top 10 genes with highest correlation to Rv3817/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3509c/ilvX | (cc=0.4806) | info on Rv3509c/ilvX |
| Rv1506c/- | (cc=0.4616) | info on Rv1506c/- |
| Rv1313c/- | (cc=0.4565) | info on Rv1313c/- |
| Rv3098c/- | (cc=0.4456) | info on Rv3098c/- |
| Rv0540/- | (cc=0.4424) | info on Rv0540/- |
| Rv0755c/PPE12 | (cc=0.4418) | info on Rv0755c/PPE12 |
| Rv2303c/- | (cc=0.4276) | info on Rv2303c/- |
| Rv3183/- | (cc=0.4269) | info on Rv3183/- |
| Rv0546c/- | (cc=0.4196) | info on Rv0546c/- |
| Rv0835/lpqQ | (cc=0.4142) | info on Rv0835/lpqQ |
Correlation of Rv3817/- with Rv3098c/-
Normalized LFCs for Rv3817/-:
(description and provenance of datasets)
| Rv3817/- | Rv3098c/- | |
| Fe_supp_jason_reseq | 1.26 | 0.096 |
| low_pH_jason_reseq | -0.504 | 0.069 |
| NO_jason_reseq | -0.725 | -1.591 |
| B6_jason_reseq | -0.757 | -0.743 |
| MHCII_jason_reseq | 1.194 | -1.732 |
| Isoniazid02 | 0.215 | -1.678 |
| Rifampicin4 | 0.588 | -0.046 |
| Ethambutol3 | 0.107 | -0.924 |
| Meropenem3 | 0.883 | 2.072 |
| Vancomycin16 | 0.605 | -0.69 |
| Rv2680_day32 | -1.131 | -0.816 |
| H37Rv_KO_MarP | -0.063 | 0.066 |
| hypoxia_3wks | 0.0 | 0.463 |
| hypoxia_6wks | -0.493 | 0.574 |
| glycerol | 0.499 | 0.821 |
| cholesterol | -0.435 | 0.0 |
| AJ | 0.758 | 0.545 |
| Bibs02 | 1.646 | 0.807 |
| Bibs02c | 1.46 | 1.034 |
| BL6 | 1.451 | 0.159 |
| BL6a | 1.4 | 0.794 |
| BXD01 | 0.442 | 0.192 |
| BXD010 | 0.168 | -0.739 |
| BXD011 | 2.88 | 0.58 |
| BXD03 | -1.417 | 0.079 |
| BXD04 | -0.59 | 0.116 |
| BXD05 | 0.422 | 0.561 |
| BXD06 | 0.068 | 0.143 |
| BXD07 | -0.739 | -0.365 |
| BXD08 | -0.496 | 0.533 |
| BXD09 | -0.297 | 0.372 |
| CAST | -0.344 | -0.455 |
| CCcont | -1.082 | -0.75 |
| DS01 | 0.518 | -0.222 |
| DS02 | -1.038 | 0.484 |
| DS04 | -0.453 | -0.152 |
| DS0c | -1.158 | -1.339 |
| GP01 | 0.257 | 0.406 |
| GP02 | -0.397 | -0.872 |
| GP0c | -1.245 | -0.257 |
| NOD | 1.222 | 1.253 |
| NZO | -0.6 | 0.074 |
| PWK | 1.128 | 0.705 |
| H37Rv_KO_CtpC | 0.85 | 0.42 |
| H37Rv_KO_CtpD | 0.703 | 0.667 |
| H37Rv_KO_Rv1272 | 0.095 | -0.156 |
| H37Rv_KO_SugABC | 1.102 | 0.461 |
| H37Rv_KO_MbtN | 1.999 | 0.308 |
| Trans05 | 1.887 | 2.1 |
| macrophage_unactivated | -2.219 | -0.808 |
| IL1 | -0.267 | -0.169 |
| Rapamycin | -1.436 | -1.307 |
| Tcell | 0.222 | -0.3 |
| GMCSF | -2.419 | 0.145 |
| IFNab | -1.874 | -1.333 |
| IFNg | -0.943 | -0.906 |
| IFNg_GMCSF1 | -2.297 | -0.179 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -0.706 | 0.881 |
| secA2_input | 0.097 | -0.49 |
| delta_Rv3594 | 0.173 | -0.844 |
| delta_Rv3717 | 0.036 | -0.808 |
| delta_Rv3811 | 1.735 | -1.151 |
| delta_Rv0954 | -0.379 | -0.368 |
| PonA1 | 0.731 | -0.663 |
| EccD1_KO | 0.664 | 0.934 |
| EspI_KO | 1.235 | 0.559 |
| PE35_KO | 0.895 | 0.481 |
| PPE68_KO | 0.595 | 0.816 |
| glycerol2 | -0.437 | 0.165 |
| lignocerate | -1.268 | -0.447 |
| oleate | -0.179 | 0.802 |
| phosphatidylcholine | -0.115 | -0.112 |
| acetate | -1.945 | -0.944 |
| glucAc | -2.552 | -0.75 |
| Rv0950ko | 0.992 | 0.754 |
| Rv1096ko | 0.742 | -0.124 |
| Rv3684ko | -0.838 | -0.033 |
| delta_otsA_trehalose | 0.0 | -1.226 |