Top 10 genes with highest correlation to Rv3813c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0930/pstA1 | (cc=0.6038) | info on Rv0930/pstA1 |
| Rv0820/phoT | (cc=0.5799) | info on Rv0820/phoT |
| Rv0928/pstS3 | (cc=0.5798) | info on Rv0928/pstS3 |
| Rv0929/pstC2 | (cc=0.5606) | info on Rv0929/pstC2 |
| Rv2841c/nusA | (cc=0.5396) | info on Rv2841c/nusA |
| Rv2206/- | (cc=0.5393) | info on Rv2206/- |
| Rv1925/fadD31 | (cc=0.5388) | info on Rv1925/fadD31 |
| Rv0818/- | (cc=0.5332) | info on Rv0818/- |
| Rv0989c/grcC2 | (cc=0.5319) | info on Rv0989c/grcC2 |
| Rv2571c/- | (cc=0.528) | info on Rv2571c/- |
Correlation of Rv3813c/- with Rv0930/pstA1
Normalized LFCs for Rv3813c/-:
(description and provenance of datasets)
| Rv3813c/- | Rv0930/pstA1 | |
| Fe_supp_jason_reseq | 0.3 | -3.511 |
| low_pH_jason_reseq | -0.038 | 1.514 |
| NO_jason_reseq | -2.51 | -4.528 |
| B6_jason_reseq | -0.026 | 0.559 |
| MHCII_jason_reseq | 0.512 | 0.542 |
| Isoniazid02 | -1.368 | -0.895 |
| Rifampicin4 | 0.122 | -2.475 |
| Ethambutol3 | 0.699 | -0.804 |
| Meropenem3 | 0.422 | -1.095 |
| Vancomycin16 | 0.313 | -0.873 |
| Rv2680_day32 | -1.196 | 4.124 |
| H37Rv_KO_MarP | 0.253 | -1.709 |
| hypoxia_3wks | -0.307 | -4.797 |
| hypoxia_6wks | -0.161 | -0.643 |
| glycerol | 1.463 | 2.384 |
| cholesterol | 1.219 | 3.675 |
| AJ | 0.324 | 2.151 |
| Bibs02 | 0.481 | 2.099 |
| Bibs02c | -0.735 | 3.109 |
| BL6 | 1.095 | 5.861 |
| BL6a | 1.172 | 6.0 |
| BXD01 | 1.298 | 6.0 |
| BXD010 | 1.134 | 6.0 |
| BXD011 | 1.773 | 6.0 |
| BXD03 | 1.281 | 5.702 |
| BXD04 | 1.082 | 6.0 |
| BXD05 | 1.578 | 6.0 |
| BXD06 | 1.521 | 6.0 |
| BXD07 | 1.197 | 6.0 |
| BXD08 | 0.913 | 6.0 |
| BXD09 | 1.479 | 6.0 |
| CAST | 0.898 | 3.707 |
| CCcont | 0.819 | 3.688 |
| DS01 | 1.001 | 1.591 |
| DS02 | 0.441 | 2.105 |
| DS04 | 1.148 | 2.995 |
| DS0c | 1.431 | 0.652 |
| GP01 | 2.51 | 5.309 |
| GP02 | 0.152 | 5.465 |
| GP0c | 1.05 | 6.0 |
| NOD | -0.869 | 2.758 |
| NZO | -0.264 | 2.082 |
| PWK | 1.321 | 4.287 |
| H37Rv_KO_CtpC | 0.985 | 4.761 |
| H37Rv_KO_CtpD | -0.319 | 1.322 |
| H37Rv_KO_Rv1272 | 1.039 | 4.933 |
| H37Rv_KO_SugABC | 2.782 | 4.965 |
| H37Rv_KO_MbtN | 0.68 | 6.0 |
| Trans05 | -1.013 | 5.408 |
| macrophage_unactivated | -1.809 | -2.285 |
| IL1 | -1.981 | -2.847 |
| Rapamycin | -2.237 | -3.428 |
| Tcell | -1.245 | -1.232 |
| GMCSF | -1.764 | -2.64 |
| IFNab | -1.01 | 2.833 |
| IFNg | -0.422 | -3.643 |
| IFNg_GMCSF1 | -0.905 | -4.515 |
| Rv1432_day32 | -0.394 | 6.0 |
| Rv1565c_day32 | 1.044 | -0.554 |
| secA2_input | 0.773 | -1.904 |
| delta_Rv3594 | -0.459 | 0.231 |
| delta_Rv3717 | 0.088 | 2.636 |
| delta_Rv3811 | 0.457 | 0.754 |
| delta_Rv0954 | 0.09 | -3.748 |
| PonA1 | 0.354 | -2.389 |
| EccD1_KO | -1.164 | -2.999 |
| EspI_KO | -0.684 | -2.923 |
| PE35_KO | -1.951 | -1.552 |
| PPE68_KO | -1.635 | -2.227 |
| glycerol2 | 0.034 | -5.348 |
| lignocerate | -0.091 | -1.016 |
| oleate | -0.695 | -5.412 |
| phosphatidylcholine | -0.459 | -3.438 |
| acetate | -0.597 | -0.605 |
| glucAc | 0.0 | -0.409 |
| Rv0950ko | 0.7 | -3.95 |
| Rv1096ko | 0.202 | 0.537 |
| Rv3684ko | 0.563 | -0.517 |
| delta_otsA_trehalose | -0.506 | 0.296 |