Top 10 genes with highest correlation to Rv3728/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2340c/PE_PGRS39 | (cc=0.5976) | info on Rv2340c/PE_PGRS39 |
| Rv3892c/PPE69 | (cc=0.526) | info on Rv3892c/PPE69 |
| Rv0470A/- | (cc=0.5126) | info on Rv0470A/- |
| Rv3879c/espK | (cc=0.5078) | info on Rv3879c/espK |
| Rv1070c/echA8 | (cc=0.4981) | info on Rv1070c/echA8 |
| Rv2141c/- | (cc=0.4958) | info on Rv2141c/- |
| Rv2149c/yfiH | (cc=0.4949) | info on Rv2149c/yfiH |
| Rv2016/- | (cc=0.4907) | info on Rv2016/- |
| Rv3440c/- | (cc=0.4899) | info on Rv3440c/- |
| Rv2265/- | (cc=0.4882) | info on Rv2265/- |
Correlation of Rv3728/- with Rv2340c/PE_PGRS39
Normalized LFCs for Rv3728/-:
(description and provenance of datasets)
| Rv3728/- | Rv2340c/PE_PGRS39 | |
| Fe_supp_jason_reseq | 0.68 | -0.063 |
| low_pH_jason_reseq | -0.478 | -0.452 |
| NO_jason_reseq | -0.572 | -0.417 |
| B6_jason_reseq | 0.13 | 0.657 |
| MHCII_jason_reseq | 0.462 | 0.619 |
| Isoniazid02 | -0.061 | 1.157 |
| Rifampicin4 | 0.382 | 0.485 |
| Ethambutol3 | 1.589 | 1.549 |
| Meropenem3 | 0.133 | 0.728 |
| Vancomycin16 | 0.042 | 0.061 |
| Rv2680_day32 | -0.102 | -0.465 |
| H37Rv_KO_MarP | 0.083 | -0.302 |
| hypoxia_3wks | -0.1 | -0.774 |
| hypoxia_6wks | -0.351 | -0.666 |
| glycerol | 0.01 | 0.65 |
| cholesterol | -0.09 | 0.315 |
| AJ | 0.114 | 0.565 |
| Bibs02 | 0.142 | 0.984 |
| Bibs02c | 0.052 | 0.679 |
| BL6 | -0.071 | -0.16 |
| BL6a | -0.466 | 0.014 |
| BXD01 | -0.52 | -0.58 |
| BXD010 | -0.157 | -0.687 |
| BXD011 | -1.145 | -0.737 |
| BXD03 | -0.362 | -0.566 |
| BXD04 | -0.11 | 0.035 |
| BXD05 | -0.369 | -0.068 |
| BXD06 | -1.036 | -0.939 |
| BXD07 | -0.702 | -0.624 |
| BXD08 | -0.155 | -0.277 |
| BXD09 | -0.821 | -0.626 |
| CAST | 0.113 | 0.794 |
| CCcont | -0.077 | -0.278 |
| DS01 | 0.139 | 0.956 |
| DS02 | 0.699 | 0.993 |
| DS04 | 0.521 | 0.45 |
| DS0c | 0.591 | 0.94 |
| GP01 | 0.202 | -0.24 |
| GP02 | -0.186 | 0.643 |
| GP0c | 0.395 | -0.111 |
| NOD | -0.011 | -0.218 |
| NZO | -0.134 | 0.48 |
| PWK | -0.175 | 0.672 |
| H37Rv_KO_CtpC | -0.084 | -0.891 |
| H37Rv_KO_CtpD | 0.421 | -0.009 |
| H37Rv_KO_Rv1272 | -0.369 | 0.232 |
| H37Rv_KO_SugABC | 0.456 | 0.386 |
| H37Rv_KO_MbtN | 0.154 | 0.239 |
| Trans05 | 0.463 | 0.28 |
| macrophage_unactivated | 0.186 | -1.004 |
| IL1 | -0.208 | -0.736 |
| Rapamycin | -0.16 | -0.62 |
| Tcell | -0.345 | -0.978 |
| GMCSF | -0.209 | -0.747 |
| IFNab | -0.051 | -0.429 |
| IFNg | -0.358 | -0.526 |
| IFNg_GMCSF1 | 0.107 | -0.154 |
| Rv1432_day32 | 0.207 | 0.352 |
| Rv1565c_day32 | 0.199 | 0.051 |
| secA2_input | 0.656 | 0.512 |
| delta_Rv3594 | -0.266 | -0.207 |
| delta_Rv3717 | -0.364 | -0.44 |
| delta_Rv3811 | -0.294 | -0.007 |
| delta_Rv0954 | 0.032 | 0.172 |
| PonA1 | -0.215 | -0.128 |
| EccD1_KO | -0.161 | 0.697 |
| EspI_KO | -0.436 | 0.211 |
| PE35_KO | 0.085 | 0.117 |
| PPE68_KO | -0.336 | 0.038 |
| glycerol2 | 0.135 | -0.041 |
| lignocerate | 0.257 | 0.516 |
| oleate | 0.275 | 0.0 |
| phosphatidylcholine | 0.259 | 0.494 |
| acetate | 0.16 | 0.116 |
| glucAc | -0.031 | 0.086 |
| Rv0950ko | 0.096 | 0.555 |
| Rv1096ko | -0.133 | -0.537 |
| Rv3684ko | -0.432 | -0.442 |
| delta_otsA_trehalose | 0.184 | -0.722 |