Top 10 genes with highest correlation to Rv3699/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3232c/ppk2 | (cc=0.4829) | info on Rv3232c/ppk2 |
| Rv3885c/eccE2 | (cc=0.4714) | info on Rv3885c/eccE2 |
| Rv0786c/- | (cc=0.4527) | info on Rv0786c/- |
| Rv0028/- | (cc=0.4235) | info on Rv0028/- |
| Rv2481c/- | (cc=0.4135) | info on Rv2481c/- |
| Rv1116/- | (cc=0.4055) | info on Rv1116/- |
| Rv3143/- | (cc=0.4031) | info on Rv3143/- |
| Rv3071/- | (cc=0.3988) | info on Rv3071/- |
| Rv0915c/PPE14 | (cc=0.3905) | info on Rv0915c/PPE14 |
| Rv1665/pks11 | (cc=0.385) | info on Rv1665/pks11 |
Correlation of Rv3699/- with Rv1116/-
Normalized LFCs for Rv3699/-:
(description and provenance of datasets)
| Rv3699/- | Rv1116/- | |
| Fe_supp_jason_reseq | 0.339 | -0.079 |
| low_pH_jason_reseq | -0.085 | 1.563 |
| NO_jason_reseq | -1.047 | -0.937 |
| B6_jason_reseq | 0.316 | -0.775 |
| MHCII_jason_reseq | 0.196 | -2.185 |
| Isoniazid02 | 0.697 | -0.202 |
| Rifampicin4 | -0.041 | -0.793 |
| Ethambutol3 | 0.169 | -0.469 |
| Meropenem3 | 0.303 | -0.329 |
| Vancomycin16 | 0.297 | -0.544 |
| Rv2680_day32 | 0.494 | -3.002 |
| H37Rv_KO_MarP | 0.188 | 0.209 |
| hypoxia_3wks | -0.084 | 0.881 |
| hypoxia_6wks | -0.679 | 0.315 |
| glycerol | -0.925 | -2.319 |
| cholesterol | -0.247 | -1.265 |
| AJ | -0.247 | -0.866 |
| Bibs02 | -0.021 | -0.507 |
| Bibs02c | 1.088 | 1.479 |
| BL6 | 0.607 | 1.089 |
| BL6a | 1.045 | 3.068 |
| BXD01 | 0.058 | 1.975 |
| BXD010 | 0.385 | 3.315 |
| BXD011 | 0.446 | 2.491 |
| BXD03 | 1.211 | 2.737 |
| BXD04 | 0.157 | 2.569 |
| BXD05 | 0.555 | 2.73 |
| BXD06 | 0.259 | 2.452 |
| BXD07 | 0.404 | 2.972 |
| BXD08 | -0.125 | 2.685 |
| BXD09 | 0.435 | 2.084 |
| CAST | -0.454 | -0.859 |
| CCcont | 0.797 | 1.588 |
| DS01 | 0.546 | -0.352 |
| DS02 | 0.83 | -2.497 |
| DS04 | -1.258 | -1.405 |
| DS0c | 0.633 | -1.425 |
| GP01 | 0.095 | 2.097 |
| GP02 | 0.835 | -0.353 |
| GP0c | 0.19 | 2.178 |
| NOD | -0.324 | -0.623 |
| NZO | -0.068 | -2.29 |
| PWK | -0.496 | -1.563 |
| H37Rv_KO_CtpC | 0.222 | 3.593 |
| H37Rv_KO_CtpD | -0.028 | 1.121 |
| H37Rv_KO_Rv1272 | 0.705 | 1.482 |
| H37Rv_KO_SugABC | 0.706 | -0.321 |
| H37Rv_KO_MbtN | -0.508 | 1.349 |
| Trans05 | 0.578 | 1.761 |
| macrophage_unactivated | 0.066 | -1.727 |
| IL1 | -0.35 | -1.216 |
| Rapamycin | -0.224 | -0.414 |
| Tcell | -0.945 | -1.606 |
| GMCSF | -0.523 | -0.38 |
| IFNab | 0.29 | -0.46 |
| IFNg | -0.508 | -1.646 |
| IFNg_GMCSF1 | 0.742 | -0.723 |
| Rv1432_day32 | 0.673 | 0.0 |
| Rv1565c_day32 | -0.09 | -0.622 |
| secA2_input | -0.473 | 0.092 |
| delta_Rv3594 | 0.236 | -2.284 |
| delta_Rv3717 | -0.495 | -0.364 |
| delta_Rv3811 | 0.07 | 0.213 |
| delta_Rv0954 | -0.508 | -1.87 |
| PonA1 | -0.237 | -3.333 |
| EccD1_KO | 0.355 | 0.51 |
| EspI_KO | 0.57 | 1.934 |
| PE35_KO | 0.933 | 0.796 |
| PPE68_KO | 1.075 | 1.523 |
| glycerol2 | -0.128 | -1.516 |
| lignocerate | -0.061 | -1.445 |
| oleate | 0.095 | -0.045 |
| phosphatidylcholine | -0.325 | -0.403 |
| acetate | 0.201 | -1.837 |
| glucAc | -0.115 | -2.853 |
| Rv0950ko | 0.286 | 1.263 |
| Rv1096ko | 0.579 | 0.989 |
| Rv3684ko | 0.95 | 0.095 |
| delta_otsA_trehalose | 0.546 | 0.483 |