Top 10 genes with highest correlation to Rv3689/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1072/- | (cc=0.6562) | info on Rv1072/- |
| Rv1387/PPE20 | (cc=0.6534) | info on Rv1387/PPE20 |
| Rv3694c/- | (cc=0.6327) | info on Rv3694c/- |
| Rv1386/PE15 | (cc=0.62) | info on Rv1386/PE15 |
| Rv3419c/gcp | (cc=0.6172) | info on Rv3419c/gcp |
| Rv1616/- | (cc=0.6155) | info on Rv1616/- |
| Rv3142c/- | (cc=0.5926) | info on Rv3142c/- |
| Rv0932c/pstS2 | (cc=0.5862) | info on Rv0932c/pstS2 |
| Rv1488/- | (cc=0.5853) | info on Rv1488/- |
| Rv2456c/- | (cc=0.5823) | info on Rv2456c/- |
Correlation of Rv3689/- with Rv1386/PE15
Normalized LFCs for Rv3689/-:
(description and provenance of datasets)
| Rv3689/- | Rv1386/PE15 | |
| Fe_supp_jason_reseq | -0.388 | -1.362 |
| low_pH_jason_reseq | -1.681 | -0.843 |
| NO_jason_reseq | 0.105 | -1.089 |
| B6_jason_reseq | 0.499 | 0.498 |
| MHCII_jason_reseq | -0.62 | -1.556 |
| Isoniazid02 | -1.107 | -0.748 |
| Rifampicin4 | 0.495 | 0.68 |
| Ethambutol3 | 0.951 | -0.547 |
| Meropenem3 | -0.364 | 0.139 |
| Vancomycin16 | -0.058 | -0.395 |
| Rv2680_day32 | -0.811 | 0.313 |
| H37Rv_KO_MarP | -1.24 | -2.023 |
| hypoxia_3wks | 0.638 | 1.332 |
| hypoxia_6wks | 0.739 | 2.063 |
| glycerol | -0.295 | -1.135 |
| cholesterol | -0.2 | -0.999 |
| AJ | 0.576 | -0.617 |
| Bibs02 | -0.311 | 0.082 |
| Bibs02c | -0.073 | -1.864 |
| BL6 | 0.728 | -0.727 |
| BL6a | 0.844 | 0.317 |
| BXD01 | 1.055 | 1.356 |
| BXD010 | 0.8 | 1.237 |
| BXD011 | 0.852 | 1.489 |
| BXD03 | 1.454 | 0.745 |
| BXD04 | 1.548 | 1.303 |
| BXD05 | 1.047 | 1.892 |
| BXD06 | 0.962 | 1.912 |
| BXD07 | 1.026 | 0.627 |
| BXD08 | 1.004 | 1.767 |
| BXD09 | 0.486 | 1.311 |
| CAST | 1.677 | 1.997 |
| CCcont | 0.27 | -0.812 |
| DS01 | -0.202 | -2.031 |
| DS02 | 0.044 | -1.739 |
| DS04 | 0.225 | 0.107 |
| DS0c | -0.091 | -1.673 |
| GP01 | 0.821 | 1.877 |
| GP02 | 0.096 | 1.883 |
| GP0c | 0.85 | 1.156 |
| NOD | 0.957 | 1.508 |
| NZO | 1.16 | -1.295 |
| PWK | 2.364 | 0.114 |
| H37Rv_KO_CtpC | 0.806 | 2.071 |
| H37Rv_KO_CtpD | 0.981 | 1.777 |
| H37Rv_KO_Rv1272 | 0.967 | 0.542 |
| H37Rv_KO_SugABC | 1.067 | 1.424 |
| H37Rv_KO_MbtN | 1.472 | 0.502 |
| Trans05 | 0.496 | 0.483 |
| macrophage_unactivated | 0.079 | -0.669 |
| IL1 | -0.374 | -1.735 |
| Rapamycin | -0.997 | -1.998 |
| Tcell | 0.508 | 0.723 |
| GMCSF | 0.132 | -0.412 |
| IFNab | 0.206 | -0.886 |
| IFNg | 0.722 | 0.192 |
| IFNg_GMCSF1 | 0.452 | 0.226 |
| Rv1432_day32 | 1.172 | 0.984 |
| Rv1565c_day32 | -0.482 | -1.099 |
| secA2_input | -0.488 | -2.109 |
| delta_Rv3594 | -0.58 | -0.817 |
| delta_Rv3717 | -0.205 | 0.999 |
| delta_Rv3811 | -0.21 | -0.596 |
| delta_Rv0954 | -0.979 | -1.097 |
| PonA1 | -0.099 | -1.627 |
| EccD1_KO | 0.122 | -0.898 |
| EspI_KO | -0.217 | -1.862 |
| PE35_KO | 0.295 | -1.502 |
| PPE68_KO | 0.208 | -1.565 |
| glycerol2 | 0.27 | -0.028 |
| lignocerate | -0.029 | -0.177 |
| oleate | 0.717 | -0.13 |
| phosphatidylcholine | -0.052 | 0.259 |
| acetate | 0.284 | -0.825 |
| glucAc | 0.188 | -0.649 |
| Rv0950ko | 0.202 | -0.314 |
| Rv1096ko | 0.85 | -0.775 |
| Rv3684ko | 0.799 | -0.858 |
| delta_otsA_trehalose | -0.482 | -1.238 |