Top 10 genes with highest correlation to Rv3652/PE_PGRS60:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0569/- | (cc=0.5626) | info on Rv0569/- |
| Rv1736c/narX | (cc=0.5455) | info on Rv1736c/narX |
| Rv0959/- | (cc=0.5353) | info on Rv0959/- |
| Rv1940/ribA1 | (cc=0.5251) | info on Rv1940/ribA1 |
| Rv2418c/- | (cc=0.5241) | info on Rv2418c/- |
| Rv2002/fabG3 | (cc=0.5229) | info on Rv2002/fabG3 |
| Rv0580c/- | (cc=0.5132) | info on Rv0580c/- |
| Rv2860c/glnA4 | (cc=0.4998) | info on Rv2860c/glnA4 |
| Rv2466c/- | (cc=0.4972) | info on Rv2466c/- |
| Rv1291c/- | (cc=0.4968) | info on Rv1291c/- |
Correlation of Rv3652/PE_PGRS60 with Rv0959/-
Normalized LFCs for Rv3652/PE_PGRS60:
(description and provenance of datasets)
| Rv3652/PE_PGRS60 | Rv0959/- | |
| Fe_supp_jason_reseq | -0.27 | 0.791 |
| low_pH_jason_reseq | 1.079 | 0.132 |
| NO_jason_reseq | 0.186 | -0.454 |
| B6_jason_reseq | 0.641 | 0.968 |
| MHCII_jason_reseq | 0.67 | 1.232 |
| Isoniazid02 | 0.33 | 0.439 |
| Rifampicin4 | -0.217 | 0.309 |
| Ethambutol3 | 0.169 | 2.998 |
| Meropenem3 | 0.153 | 0.491 |
| Vancomycin16 | 1.101 | 0.255 |
| Rv2680_day32 | 2.801 | 1.803 |
| H37Rv_KO_MarP | 0.104 | -0.037 |
| hypoxia_3wks | 0.618 | -0.072 |
| hypoxia_6wks | 0.084 | 0.038 |
| glycerol | 0.62 | 0.786 |
| cholesterol | 0.779 | 0.706 |
| AJ | -0.111 | -0.536 |
| Bibs02 | 0.699 | 0.51 |
| Bibs02c | -0.573 | -0.459 |
| BL6 | -1.002 | -0.123 |
| BL6a | -0.512 | -0.601 |
| BXD01 | -0.249 | -0.379 |
| BXD010 | -0.837 | -1.209 |
| BXD011 | -0.305 | -1.144 |
| BXD03 | -1.399 | -1.156 |
| BXD04 | -0.409 | -0.932 |
| BXD05 | -0.534 | -0.052 |
| BXD06 | -0.522 | -0.663 |
| BXD07 | -0.716 | -0.511 |
| BXD08 | -0.091 | -0.201 |
| BXD09 | -0.683 | -0.808 |
| CAST | 0.155 | -0.4 |
| CCcont | -1.008 | -0.571 |
| DS01 | 0.712 | 0.065 |
| DS02 | -0.26 | 0.759 |
| DS04 | 0.557 | -0.018 |
| DS0c | -0.508 | 0.41 |
| GP01 | -0.386 | -0.476 |
| GP02 | 0.445 | 0.805 |
| GP0c | -0.907 | -0.212 |
| NOD | -0.462 | 0.241 |
| NZO | 0.262 | -0.038 |
| PWK | -0.618 | -0.453 |
| H37Rv_KO_CtpC | -2.385 | -1.32 |
| H37Rv_KO_CtpD | -1.86 | -0.954 |
| H37Rv_KO_Rv1272 | -0.668 | -0.659 |
| H37Rv_KO_SugABC | -1.701 | -0.434 |
| H37Rv_KO_MbtN | -0.861 | -2.086 |
| Trans05 | -1.511 | -0.482 |
| macrophage_unactivated | 0.114 | 1.872 |
| IL1 | 1.21 | 0.068 |
| Rapamycin | -0.377 | 0.138 |
| Tcell | -0.222 | 1.408 |
| GMCSF | 0.61 | 0.119 |
| IFNab | 1.233 | -0.36 |
| IFNg | -0.139 | -1.384 |
| IFNg_GMCSF1 | 0.138 | -0.299 |
| Rv1432_day32 | 0.343 | 0.754 |
| Rv1565c_day32 | 0.722 | -0.37 |
| secA2_input | -0.258 | -1.05 |
| delta_Rv3594 | -0.376 | -0.592 |
| delta_Rv3717 | 0.789 | -0.71 |
| delta_Rv3811 | -0.291 | -0.983 |
| delta_Rv0954 | 0.247 | -0.234 |
| PonA1 | -0.455 | 0.072 |
| EccD1_KO | 0.638 | 0.0 |
| EspI_KO | 0.428 | 1.204 |
| PE35_KO | 1.152 | 0.971 |
| PPE68_KO | 0.729 | 1.283 |
| glycerol2 | 0.42 | 0.053 |
| lignocerate | -0.161 | 0.069 |
| oleate | 0.961 | 0.328 |
| phosphatidylcholine | 0.193 | 0.52 |
| acetate | -0.091 | 0.095 |
| glucAc | -0.6 | 0.701 |
| Rv0950ko | -0.226 | 0.703 |
| Rv1096ko | 0.422 | 0.956 |
| Rv3684ko | 0.177 | 0.969 |
| delta_otsA_trehalose | 1.871 | 1.045 |