Top 10 genes with highest correlation to Rv3652/PE_PGRS60:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0569/- | (cc=0.5626) | info on Rv0569/- |
| Rv1736c/narX | (cc=0.5455) | info on Rv1736c/narX |
| Rv0959/- | (cc=0.5353) | info on Rv0959/- |
| Rv1940/ribA1 | (cc=0.5251) | info on Rv1940/ribA1 |
| Rv2418c/- | (cc=0.5241) | info on Rv2418c/- |
| Rv2002/fabG3 | (cc=0.5229) | info on Rv2002/fabG3 |
| Rv0580c/- | (cc=0.5132) | info on Rv0580c/- |
| Rv2860c/glnA4 | (cc=0.4998) | info on Rv2860c/glnA4 |
| Rv2466c/- | (cc=0.4972) | info on Rv2466c/- |
| Rv1291c/- | (cc=0.4968) | info on Rv1291c/- |
Correlation of Rv3652/PE_PGRS60 with Rv0569/-
Normalized LFCs for Rv3652/PE_PGRS60:
(description and provenance of datasets)
| Rv3652/PE_PGRS60 | Rv0569/- | |
| Fe_supp_jason_reseq | -0.27 | -1.485 |
| low_pH_jason_reseq | 1.079 | -0.716 |
| NO_jason_reseq | 0.186 | -0.252 |
| B6_jason_reseq | 0.641 | 1.587 |
| MHCII_jason_reseq | 0.67 | 1.691 |
| Isoniazid02 | 0.33 | -0.192 |
| Rifampicin4 | -0.217 | 0.154 |
| Ethambutol3 | 0.169 | 1.679 |
| Meropenem3 | 0.153 | -0.053 |
| Vancomycin16 | 1.101 | 0.528 |
| Rv2680_day32 | 2.801 | -0.348 |
| H37Rv_KO_MarP | 0.104 | -0.461 |
| hypoxia_3wks | 0.618 | -0.08 |
| hypoxia_6wks | 0.084 | -0.75 |
| glycerol | 0.62 | -0.43 |
| cholesterol | 0.779 | -0.452 |
| AJ | -0.111 | -0.294 |
| Bibs02 | 0.699 | 0.691 |
| Bibs02c | -0.573 | -1.079 |
| BL6 | -1.002 | -0.127 |
| BL6a | -0.512 | -1.181 |
| BXD01 | -0.249 | -0.636 |
| BXD010 | -0.837 | -1.186 |
| BXD011 | -0.305 | -1.267 |
| BXD03 | -1.399 | -1.296 |
| BXD04 | -0.409 | 0.528 |
| BXD05 | -0.534 | -1.498 |
| BXD06 | -0.522 | -1.592 |
| BXD07 | -0.716 | -1.04 |
| BXD08 | -0.091 | -1.694 |
| BXD09 | -0.683 | -1.476 |
| CAST | 0.155 | -0.506 |
| CCcont | -1.008 | -1.548 |
| DS01 | 0.712 | 0.373 |
| DS02 | -0.26 | 0.165 |
| DS04 | 0.557 | -0.202 |
| DS0c | -0.508 | 0.178 |
| GP01 | -0.386 | 0.776 |
| GP02 | 0.445 | 1.362 |
| GP0c | -0.907 | -0.815 |
| NOD | -0.462 | 0.171 |
| NZO | 0.262 | -0.686 |
| PWK | -0.618 | -0.361 |
| H37Rv_KO_CtpC | -2.385 | -1.599 |
| H37Rv_KO_CtpD | -1.86 | -1.699 |
| H37Rv_KO_Rv1272 | -0.668 | -1.84 |
| H37Rv_KO_SugABC | -1.701 | -2.259 |
| H37Rv_KO_MbtN | -0.861 | -2.547 |
| Trans05 | -1.511 | -1.505 |
| macrophage_unactivated | 0.114 | -0.148 |
| IL1 | 1.21 | -0.178 |
| Rapamycin | -0.377 | -1.356 |
| Tcell | -0.222 | -0.544 |
| GMCSF | 0.61 | -0.618 |
| IFNab | 1.233 | -0.142 |
| IFNg | -0.139 | -0.216 |
| IFNg_GMCSF1 | 0.138 | -1.373 |
| Rv1432_day32 | 0.343 | -0.508 |
| Rv1565c_day32 | 0.722 | 0.199 |
| secA2_input | -0.258 | 0.805 |
| delta_Rv3594 | -0.376 | -0.184 |
| delta_Rv3717 | 0.789 | 0.297 |
| delta_Rv3811 | -0.291 | 0.593 |
| delta_Rv0954 | 0.247 | -0.518 |
| PonA1 | -0.455 | 0.128 |
| EccD1_KO | 0.638 | 0.428 |
| EspI_KO | 0.428 | 0.459 |
| PE35_KO | 1.152 | -0.099 |
| PPE68_KO | 0.729 | -0.205 |
| glycerol2 | 0.42 | 1.08 |
| lignocerate | -0.161 | -0.408 |
| oleate | 0.961 | 1.253 |
| phosphatidylcholine | 0.193 | 0.255 |
| acetate | -0.091 | -0.49 |
| glucAc | -0.6 | -1.225 |
| Rv0950ko | -0.226 | 0.0 |
| Rv1096ko | 0.422 | 0.452 |
| Rv3684ko | 0.177 | 0.131 |
| delta_otsA_trehalose | 1.871 | 1.266 |