Top 10 genes with highest correlation to Rv3552/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3544c/fadE28 | (cc=0.7798) | info on Rv3544c/fadE28 |
| Rv3556c/fadA6 | (cc=0.7122) | info on Rv3556c/fadA6 |
| Rv3551/- | (cc=0.682) | info on Rv3551/- |
| Rv1590/- | (cc=0.6761) | info on Rv1590/- |
| Rv1589/bioB | (cc=0.6661) | info on Rv1589/bioB |
| Rv1568/bioA | (cc=0.6603) | info on Rv1568/bioA |
| Rv3870/eccCa1 | (cc=0.6599) | info on Rv3870/eccCa1 |
| Rv3882c/eccE1 | (cc=0.6591) | info on Rv3882c/eccE1 |
| Rv0216/- | (cc=0.659) | info on Rv0216/- |
| Rv3545c/cyp125 | (cc=0.6555) | info on Rv3545c/cyp125 |
Correlation of Rv3552/- with Rv3544c/fadE28
Normalized LFCs for Rv3552/-:
(description and provenance of datasets)
| Rv3552/- | Rv3544c/fadE28 | |
| Fe_supp_jason_reseq | -0.559 | -0.39 |
| low_pH_jason_reseq | -0.801 | -0.234 |
| NO_jason_reseq | -0.255 | 0.205 |
| B6_jason_reseq | -2.443 | -2.959 |
| MHCII_jason_reseq | -1.677 | -2.606 |
| Isoniazid02 | -0.351 | 0.044 |
| Rifampicin4 | 0.428 | 0.495 |
| Ethambutol3 | -0.333 | -0.036 |
| Meropenem3 | 2.904 | -0.359 |
| Vancomycin16 | 0.215 | 0.692 |
| Rv2680_day32 | -1.711 | -0.725 |
| H37Rv_KO_MarP | -0.08 | 0.442 |
| hypoxia_3wks | -0.447 | 0.475 |
| hypoxia_6wks | 0.288 | 0.267 |
| glycerol | -1.195 | 1.202 |
| cholesterol | -1.981 | -3.408 |
| AJ | -3.173 | -5.459 |
| Bibs02 | -2.501 | -4.302 |
| Bibs02c | -2.862 | -3.895 |
| BL6 | -1.27 | -2.705 |
| BL6a | -2.33 | -3.821 |
| BXD01 | -0.331 | -1.93 |
| BXD010 | -0.373 | -1.787 |
| BXD011 | -0.96 | -2.143 |
| BXD03 | 0.0 | -2.202 |
| BXD04 | -0.271 | -1.184 |
| BXD05 | -1.583 | -1.621 |
| BXD06 | -1.26 | -2.774 |
| BXD07 | -1.629 | -0.872 |
| BXD08 | -1.165 | -1.388 |
| BXD09 | -1.142 | -2.616 |
| CAST | -3.15 | -5.189 |
| CCcont | 0.531 | 0.243 |
| DS01 | -3.23 | -5.557 |
| DS02 | -2.974 | -5.117 |
| DS04 | -2.282 | -3.373 |
| DS0c | -2.967 | -4.69 |
| GP01 | -1.162 | -1.976 |
| GP02 | -1.138 | -1.665 |
| GP0c | 0.325 | -0.2 |
| NOD | -3.072 | -4.182 |
| NZO | -2.728 | -4.693 |
| PWK | -2.683 | -4.615 |
| H37Rv_KO_CtpC | -2.222 | -2.824 |
| H37Rv_KO_CtpD | -1.385 | -2.131 |
| H37Rv_KO_Rv1272 | -1.659 | -2.028 |
| H37Rv_KO_SugABC | 0.352 | 0.929 |
| H37Rv_KO_MbtN | -0.61 | 0.27 |
| Trans05 | -1.327 | -2.128 |
| macrophage_unactivated | -0.871 | -0.735 |
| IL1 | -2.61 | 0.0 |
| Rapamycin | -0.509 | 0.957 |
| Tcell | -2.333 | -3.314 |
| GMCSF | -0.084 | -0.18 |
| IFNab | 2.304 | 2.576 |
| IFNg | -0.946 | -0.323 |
| IFNg_GMCSF1 | -3.777 | -0.795 |
| Rv1432_day32 | -4.735 | -4.12 |
| Rv1565c_day32 | -0.766 | -2.426 |
| secA2_input | 1.043 | 1.204 |
| delta_Rv3594 | 1.221 | 1.358 |
| delta_Rv3717 | 0.151 | 0.964 |
| delta_Rv3811 | 1.392 | 1.451 |
| delta_Rv0954 | 0.985 | 1.18 |
| PonA1 | 2.575 | 2.063 |
| EccD1_KO | 1.365 | -0.852 |
| EspI_KO | 0.134 | -0.057 |
| PE35_KO | 0.884 | 0.642 |
| PPE68_KO | 1.661 | -0.128 |
| glycerol2 | -0.858 | 0.514 |
| lignocerate | -1.0 | -0.246 |
| oleate | -0.397 | 0.335 |
| phosphatidylcholine | -0.926 | -0.038 |
| acetate | -1.214 | -0.758 |
| glucAc | -1.35 | -0.612 |
| Rv0950ko | -1.194 | 0.874 |
| Rv1096ko | 0.492 | 0.458 |
| Rv3684ko | -0.498 | 0.691 |
| delta_otsA_trehalose | -0.542 | 0.993 |