Top 10 genes with highest correlation to Rv3512/PE_PGRS56:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1087/PE_PGRS21 | (cc=0.7395) | info on Rv1087/PE_PGRS21 |
| Rv3508/PE_PGRS54 | (cc=0.7258) | info on Rv3508/PE_PGRS54 |
| Rv3514/PE_PGRS57 | (cc=0.7087) | info on Rv3514/PE_PGRS57 |
| Rv1091/PE_PGRS22 | (cc=0.6852) | info on Rv1091/PE_PGRS22 |
| Rv3345c/PE_PGRS50 | (cc=0.6749) | info on Rv3345c/PE_PGRS50 |
| Rv0833/PE_PGRS13 | (cc=0.6545) | info on Rv0833/PE_PGRS13 |
| Rv2815c/- | (cc=0.5911) | info on Rv2815c/- |
| Rv3511/PE_PGRS55 | (cc=0.5701) | info on Rv3511/PE_PGRS55 |
| Rv2479c/- | (cc=0.5599) | info on Rv2479c/- |
| Rv2814c/- | (cc=0.5554) | info on Rv2814c/- |
Correlation of Rv3512/PE_PGRS56 with Rv3508/PE_PGRS54
Normalized LFCs for Rv3512/PE_PGRS56:
(description and provenance of datasets)
| Rv3512/PE_PGRS56 | Rv3508/PE_PGRS54 | |
| Fe_supp_jason_reseq | -0.587 | -0.532 |
| low_pH_jason_reseq | -1.091 | 0.0 |
| NO_jason_reseq | -0.176 | 0.0 |
| B6_jason_reseq | -0.322 | -0.103 |
| MHCII_jason_reseq | 0.123 | 0.591 |
| Isoniazid02 | -1.909 | -2.021 |
| Rifampicin4 | -0.647 | 0.772 |
| Ethambutol3 | -0.537 | -1.28 |
| Meropenem3 | -0.737 | -1.748 |
| Vancomycin16 | -0.963 | -0.727 |
| Rv2680_day32 | 0.529 | 0.046 |
| H37Rv_KO_MarP | 0.0 | -0.103 |
| hypoxia_3wks | -0.183 | -0.215 |
| hypoxia_6wks | -1.13 | -0.616 |
| glycerol | 1.981 | 1.028 |
| cholesterol | 1.209 | 0.648 |
| AJ | 2.276 | 0.726 |
| Bibs02 | 1.27 | 0.73 |
| Bibs02c | 1.576 | 0.415 |
| BL6 | 0.263 | -0.269 |
| BL6a | 0.914 | 0.27 |
| BXD01 | 0.695 | 0.259 |
| BXD010 | 1.102 | -0.276 |
| BXD011 | 0.49 | -0.236 |
| BXD03 | 0.573 | -0.033 |
| BXD04 | 0.859 | 0.03 |
| BXD05 | 0.764 | 0.397 |
| BXD06 | 0.075 | 0.182 |
| BXD07 | 0.291 | 0.408 |
| BXD08 | 0.341 | 0.947 |
| BXD09 | 0.36 | 0.162 |
| CAST | 0.484 | 0.364 |
| CCcont | 0.24 | -0.193 |
| DS01 | 0.38 | -0.058 |
| DS02 | 0.922 | 0.104 |
| DS04 | 0.11 | 0.607 |
| DS0c | -0.129 | -0.28 |
| GP01 | 0.561 | 1.149 |
| GP02 | 0.553 | 1.255 |
| GP0c | 0.738 | 1.092 |
| NOD | 0.0 | -0.169 |
| NZO | 1.326 | 0.272 |
| PWK | 0.674 | 0.783 |
| H37Rv_KO_CtpC | 0.261 | -0.209 |
| H37Rv_KO_CtpD | 0.584 | 0.441 |
| H37Rv_KO_Rv1272 | 1.177 | 0.934 |
| H37Rv_KO_SugABC | 0.381 | -0.243 |
| H37Rv_KO_MbtN | -0.271 | 0.184 |
| Trans05 | 1.157 | 0.361 |
| macrophage_unactivated | -0.537 | -0.287 |
| IL1 | -1.978 | -0.365 |
| Rapamycin | -1.795 | -1.126 |
| Tcell | -1.652 | -1.072 |
| GMCSF | -0.779 | -0.158 |
| IFNab | -2.283 | -1.345 |
| IFNg | -1.157 | -1.082 |
| IFNg_GMCSF1 | -0.349 | -0.698 |
| Rv1432_day32 | 0.252 | 0.855 |
| Rv1565c_day32 | -1.275 | -0.52 |
| secA2_input | 0.0 | 0.131 |
| delta_Rv3594 | 0.272 | -0.402 |
| delta_Rv3717 | -0.629 | -0.352 |
| delta_Rv3811 | -0.253 | -0.269 |
| delta_Rv0954 | -2.288 | -1.151 |
| PonA1 | 0.714 | 0.032 |
| EccD1_KO | 0.418 | -0.207 |
| EspI_KO | -0.451 | 0.043 |
| PE35_KO | -0.916 | -0.28 |
| PPE68_KO | -0.685 | -0.525 |
| glycerol2 | 0.109 | 0.347 |
| lignocerate | 0.505 | 0.157 |
| oleate | -0.515 | 0.296 |
| phosphatidylcholine | 0.0 | 0.451 |
| acetate | 1.225 | 0.474 |
| glucAc | 1.367 | 0.753 |
| Rv0950ko | -0.63 | -0.057 |
| Rv1096ko | 0.115 | 0.226 |
| Rv3684ko | -0.065 | -0.193 |
| delta_otsA_trehalose | 0.366 | -0.026 |