Top 10 genes with highest correlation to Rv3485c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3585/radA | (cc=0.5197) | info on Rv3585/radA |
| Rv3532/PPE61 | (cc=0.4593) | info on Rv3532/PPE61 |
| Rv0144/- | (cc=0.4579) | info on Rv0144/- |
| Rv2300c/- | (cc=0.4561) | info on Rv2300c/- |
| Rv2994/- | (cc=0.427) | info on Rv2994/- |
| Rv3107c/agpS | (cc=0.4169) | info on Rv3107c/agpS |
| Rv2770c/PPE44 | (cc=0.4152) | info on Rv2770c/PPE44 |
| Rv2341/lppQ | (cc=0.4115) | info on Rv2341/lppQ |
| Rv0267/narU | (cc=0.4085) | info on Rv0267/narU |
| Rv0477/- | (cc=0.4001) | info on Rv0477/- |
Correlation of Rv3485c/- with Rv2994/-
Normalized LFCs for Rv3485c/-:
(description and provenance of datasets)
| Rv3485c/- | Rv2994/- | |
| Fe_supp_jason_reseq | -0.297 | -0.358 |
| low_pH_jason_reseq | -1.303 | -0.865 |
| NO_jason_reseq | -0.704 | -0.074 |
| B6_jason_reseq | 0.098 | 0.503 |
| MHCII_jason_reseq | 0.988 | 0.585 |
| Isoniazid02 | 0.819 | 0.192 |
| Rifampicin4 | -0.774 | 0.72 |
| Ethambutol3 | 0.277 | 0.413 |
| Meropenem3 | 0.791 | 0.207 |
| Vancomycin16 | 0.061 | 0.531 |
| Rv2680_day32 | -1.673 | -0.56 |
| H37Rv_KO_MarP | -0.082 | 0.099 |
| hypoxia_3wks | 0.415 | 0.335 |
| hypoxia_6wks | -0.019 | 0.695 |
| glycerol | -0.278 | -0.278 |
| cholesterol | -0.524 | -0.106 |
| AJ | -0.37 | 0.131 |
| Bibs02 | -0.298 | -0.012 |
| Bibs02c | -0.094 | 0.45 |
| BL6 | -0.48 | 0.603 |
| BL6a | -0.353 | 0.363 |
| BXD01 | -0.386 | -0.321 |
| BXD010 | -0.307 | -0.158 |
| BXD011 | -0.356 | 0.293 |
| BXD03 | -0.12 | -0.026 |
| BXD04 | -0.526 | -0.42 |
| BXD05 | -0.611 | 0.398 |
| BXD06 | -0.288 | 0.009 |
| BXD07 | -0.359 | 0.144 |
| BXD08 | 0.077 | 0.222 |
| BXD09 | -0.571 | -0.009 |
| CAST | -0.269 | 0.143 |
| CCcont | -1.139 | -0.494 |
| DS01 | -0.351 | 0.419 |
| DS02 | -0.539 | -0.284 |
| DS04 | -0.632 | -0.142 |
| DS0c | 0.086 | 0.5 |
| GP01 | 0.629 | 0.516 |
| GP02 | 0.94 | 0.412 |
| GP0c | -0.038 | -0.141 |
| NOD | -0.072 | 0.208 |
| NZO | -0.4 | -0.16 |
| PWK | -0.168 | 0.182 |
| H37Rv_KO_CtpC | -0.241 | -0.064 |
| H37Rv_KO_CtpD | 0.161 | -0.251 |
| H37Rv_KO_Rv1272 | 0.69 | -0.968 |
| H37Rv_KO_SugABC | 0.472 | 1.032 |
| H37Rv_KO_MbtN | -0.488 | -1.404 |
| Trans05 | -0.112 | -0.209 |
| macrophage_unactivated | -0.41 | -0.445 |
| IL1 | 0.308 | -0.047 |
| Rapamycin | -0.135 | -0.457 |
| Tcell | -0.29 | -0.782 |
| GMCSF | 0.581 | 0.821 |
| IFNab | 0.145 | -0.221 |
| IFNg | -0.088 | -0.353 |
| IFNg_GMCSF1 | 0.035 | -0.415 |
| Rv1432_day32 | 1.155 | 1.036 |
| Rv1565c_day32 | -1.016 | 0.294 |
| secA2_input | 0.612 | 0.614 |
| delta_Rv3594 | -0.548 | 0.167 |
| delta_Rv3717 | -1.073 | 0.118 |
| delta_Rv3811 | -0.512 | -0.123 |
| delta_Rv0954 | -1.11 | -0.021 |
| PonA1 | -0.941 | -0.575 |
| EccD1_KO | -0.927 | -0.109 |
| EspI_KO | -0.499 | 0.046 |
| PE35_KO | -0.919 | -0.61 |
| PPE68_KO | -0.464 | -0.106 |
| glycerol2 | 0.205 | -0.626 |
| lignocerate | -0.412 | -0.772 |
| oleate | 0.554 | -0.4 |
| phosphatidylcholine | -0.081 | -0.437 |
| acetate | -0.61 | -0.874 |
| glucAc | -1.39 | -1.191 |
| Rv0950ko | 0.292 | 0.048 |
| Rv1096ko | 0.365 | 0.832 |
| Rv3684ko | -1.104 | 0.452 |
| delta_otsA_trehalose | -0.021 | 1.026 |