Top 10 genes with highest correlation to Rv3471c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2917/- | (cc=0.5722) | info on Rv2917/- |
| Rv0481c/- | (cc=0.5721) | info on Rv0481c/- |
| Rv0621/- | (cc=0.5541) | info on Rv0621/- |
| Rv1864c/- | (cc=0.5473) | info on Rv1864c/- |
| Rv0901/- | (cc=0.5245) | info on Rv0901/- |
| Rv3655c/- | (cc=0.5191) | info on Rv3655c/- |
| Rv0630c/recB | (cc=0.5073) | info on Rv0630c/recB |
| Rv3612c/- | (cc=0.5034) | info on Rv3612c/- |
| Rv0233/nrdB | (cc=0.5011) | info on Rv0233/nrdB |
| Rv1182/papA3 | (cc=0.4963) | info on Rv1182/papA3 |
Correlation of Rv3471c/- with Rv2917/-
Normalized LFCs for Rv3471c/-:
(description and provenance of datasets)
| Rv3471c/- | Rv2917/- | |
| Fe_supp_jason_reseq | -1.039 | -0.085 |
| low_pH_jason_reseq | 0.458 | -0.395 |
| NO_jason_reseq | 0.701 | -0.181 |
| B6_jason_reseq | 0.733 | 1.063 |
| MHCII_jason_reseq | 0.702 | 0.894 |
| Isoniazid02 | 0.029 | 0.57 |
| Rifampicin4 | -0.141 | 0.089 |
| Ethambutol3 | 1.375 | 0.99 |
| Meropenem3 | 0.184 | 1.087 |
| Vancomycin16 | -0.645 | 0.231 |
| Rv2680_day32 | -0.576 | -0.055 |
| H37Rv_KO_MarP | 0.25 | 0.051 |
| hypoxia_3wks | 0.339 | 0.323 |
| hypoxia_6wks | -1.094 | 0.169 |
| glycerol | 0.584 | 0.623 |
| cholesterol | -0.519 | 0.27 |
| AJ | 0.619 | 0.061 |
| Bibs02 | 1.052 | 0.49 |
| Bibs02c | 0.611 | 0.652 |
| BL6 | -1.711 | -0.73 |
| BL6a | -0.103 | -0.009 |
| BXD01 | -1.823 | -0.198 |
| BXD010 | -0.834 | -1.009 |
| BXD011 | -1.306 | -0.867 |
| BXD03 | -2.321 | -0.669 |
| BXD04 | -2.531 | -0.998 |
| BXD05 | -1.95 | -0.538 |
| BXD06 | -0.818 | -0.516 |
| BXD07 | -1.567 | -0.675 |
| BXD08 | -1.758 | -0.558 |
| BXD09 | -2.295 | -1.094 |
| CAST | -0.058 | 0.496 |
| CCcont | -3.101 | -0.884 |
| DS01 | 1.381 | 0.601 |
| DS02 | 1.063 | 0.085 |
| DS04 | 1.831 | 0.928 |
| DS0c | 1.299 | 0.338 |
| GP01 | -1.785 | 0.068 |
| GP02 | -1.78 | 0.161 |
| GP0c | -0.888 | -0.041 |
| NOD | -0.713 | 0.376 |
| NZO | -0.316 | 0.273 |
| PWK | 0.45 | 0.618 |
| H37Rv_KO_CtpC | -0.434 | -0.166 |
| H37Rv_KO_CtpD | 0.744 | -0.952 |
| H37Rv_KO_Rv1272 | -0.565 | 0.148 |
| H37Rv_KO_SugABC | 0.741 | 0.876 |
| H37Rv_KO_MbtN | 1.908 | -0.392 |
| Trans05 | -0.157 | -0.065 |
| macrophage_unactivated | 0.379 | -0.063 |
| IL1 | -0.095 | -0.792 |
| Rapamycin | -0.35 | 0.061 |
| Tcell | -1.284 | -0.238 |
| GMCSF | -0.679 | 0.0 |
| IFNab | -0.949 | -0.317 |
| IFNg | 0.043 | 0.027 |
| IFNg_GMCSF1 | 0.556 | 0.063 |
| Rv1432_day32 | 1.237 | 0.112 |
| Rv1565c_day32 | -1.099 | -0.174 |
| secA2_input | -0.085 | -0.501 |
| delta_Rv3594 | 0.153 | 0.395 |
| delta_Rv3717 | 0.033 | 0.792 |
| delta_Rv3811 | -1.5 | 0.327 |
| delta_Rv0954 | -0.14 | 0.684 |
| PonA1 | 0.179 | 0.854 |
| EccD1_KO | 0.082 | 0.753 |
| EspI_KO | 0.385 | 0.436 |
| PE35_KO | -0.023 | 0.123 |
| PPE68_KO | 0.054 | 0.202 |
| glycerol2 | -0.963 | -0.091 |
| lignocerate | -0.634 | -0.387 |
| oleate | -0.373 | 0.379 |
| phosphatidylcholine | -0.686 | 0.16 |
| acetate | -0.667 | -0.416 |
| glucAc | -0.415 | -0.97 |
| Rv0950ko | -0.184 | -0.163 |
| Rv1096ko | 0.027 | 0.793 |
| Rv3684ko | -0.724 | 0.272 |
| delta_otsA_trehalose | 0.289 | 0.718 |