Top 10 genes with highest correlation to Rv3409c/choD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3711c/dnaQ | (cc=0.4479) | info on Rv3711c/dnaQ |
| Rv3687c/rsfB | (cc=0.4392) | info on Rv3687c/rsfB |
| Rv0021c/- | (cc=0.4352) | info on Rv0021c/- |
| Rv2495c/bkdC | (cc=0.4205) | info on Rv2495c/bkdC |
| Rv3000/- | (cc=0.42) | info on Rv3000/- |
| Rv3483c/- | (cc=0.4078) | info on Rv3483c/- |
| Rv3390/lpqD | (cc=0.3989) | info on Rv3390/lpqD |
| Rv0654/- | (cc=0.3972) | info on Rv0654/- |
| Rv2829c/vapC22 | (cc=0.397) | info on Rv2829c/vapC22 |
| Rv0434/- | (cc=0.3948) | info on Rv0434/- |
Correlation of Rv3409c/choD with Rv3711c/dnaQ
Normalized LFCs for Rv3409c/choD:
(description and provenance of datasets)
| Rv3409c/choD | Rv3711c/dnaQ | |
| Fe_supp_jason_reseq | -0.478 | -0.433 |
| low_pH_jason_reseq | -0.801 | -0.047 |
| NO_jason_reseq | 0.102 | -0.074 |
| B6_jason_reseq | -0.457 | -0.604 |
| MHCII_jason_reseq | -0.428 | -0.194 |
| Isoniazid02 | 0.204 | -0.167 |
| Rifampicin4 | -0.75 | -0.571 |
| Ethambutol3 | 0.569 | -0.209 |
| Meropenem3 | 1.243 | 1.414 |
| Vancomycin16 | -0.31 | -0.332 |
| Rv2680_day32 | -0.066 | 0.627 |
| H37Rv_KO_MarP | 0.402 | -0.238 |
| hypoxia_3wks | 0.311 | -0.439 |
| hypoxia_6wks | 0.367 | -0.328 |
| glycerol | 0.202 | 1.463 |
| cholesterol | 0.314 | 0.32 |
| AJ | -0.141 | 0.0 |
| Bibs02 | -0.174 | -0.086 |
| Bibs02c | -0.199 | 0.788 |
| BL6 | -0.27 | 0.599 |
| BL6a | 0.121 | 0.375 |
| BXD01 | -0.356 | -0.392 |
| BXD010 | -0.409 | -0.092 |
| BXD011 | 0.436 | 0.157 |
| BXD03 | 0.281 | 0.175 |
| BXD04 | 0.465 | -0.01 |
| BXD05 | -0.043 | 0.47 |
| BXD06 | 0.12 | 0.209 |
| BXD07 | -0.126 | 0.042 |
| BXD08 | -0.299 | 0.06 |
| BXD09 | 0.222 | -0.089 |
| CAST | 0.087 | 0.522 |
| CCcont | -0.053 | -0.012 |
| DS01 | -0.144 | 0.89 |
| DS02 | -0.022 | 0.44 |
| DS04 | 0.381 | 0.645 |
| DS0c | 0.25 | 0.479 |
| GP01 | -0.252 | -0.173 |
| GP02 | -0.515 | 0.068 |
| GP0c | -0.337 | 0.517 |
| NOD | -0.299 | -0.124 |
| NZO | 0.147 | 0.377 |
| PWK | 0.431 | 0.696 |
| H37Rv_KO_CtpC | -0.905 | -1.011 |
| H37Rv_KO_CtpD | 0.63 | 0.811 |
| H37Rv_KO_Rv1272 | 0.219 | 0.837 |
| H37Rv_KO_SugABC | -0.384 | 0.921 |
| H37Rv_KO_MbtN | -0.836 | -0.228 |
| Trans05 | -0.169 | 0.413 |
| macrophage_unactivated | -0.742 | -0.893 |
| IL1 | 0.611 | -0.412 |
| Rapamycin | 0.632 | 0.028 |
| Tcell | 0.016 | -0.424 |
| GMCSF | 0.143 | -0.217 |
| IFNab | 0.478 | 0.209 |
| IFNg | 0.013 | 0.251 |
| IFNg_GMCSF1 | 0.465 | 0.622 |
| Rv1432_day32 | 0.385 | 0.175 |
| Rv1565c_day32 | -0.708 | -0.499 |
| secA2_input | 0.139 | 1.19 |
| delta_Rv3594 | -0.234 | 0.889 |
| delta_Rv3717 | -0.059 | 1.055 |
| delta_Rv3811 | -0.039 | -0.034 |
| delta_Rv0954 | -0.266 | -0.234 |
| PonA1 | -0.301 | 0.436 |
| EccD1_KO | -0.53 | -1.25 |
| EspI_KO | -0.074 | -0.91 |
| PE35_KO | -0.335 | -1.388 |
| PPE68_KO | -0.646 | -1.523 |
| glycerol2 | 0.217 | 0.345 |
| lignocerate | 0.34 | 0.487 |
| oleate | -0.028 | -0.553 |
| phosphatidylcholine | 0.036 | -0.129 |
| acetate | -0.326 | 0.387 |
| glucAc | 0.267 | 0.267 |
| Rv0950ko | 0.639 | 0.606 |
| Rv1096ko | 0.223 | 0.781 |
| Rv3684ko | -0.295 | 0.819 |
| delta_otsA_trehalose | 0.043 | 0.657 |