TnSeqCorr

Top 10 genes with highest correlation to Rv3365c/-:

update plotcorrelationlink to info on gene
Rv0385/- (cc=0.6551) info on Rv0385/-
Rv3271c/- (cc=0.5616) info on Rv3271c/-
Rv3194c/- (cc=0.5528) info on Rv3194c/-
Rv2696c/- (cc=0.5237) info on Rv2696c/-
Rv0774c/- (cc=0.5138) info on Rv0774c/-
Rv3191c/- (cc=0.5124) info on Rv3191c/-
Rv2352c/PPE38 (cc=0.5117) info on Rv2352c/PPE38
Rv3156/nuoL (cc=0.4913) info on Rv3156/nuoL
Rv0301/vapC2 (cc=0.4892) info on Rv0301/vapC2
Rv0104/- (cc=0.4804) info on Rv0104/-

Correlation of Rv3365c/- with Rv0385/-

Normalized LFCs for Rv3365c/-:
(description and provenance of datasets)
Rv3365c/-Rv0385/-
Fe_supp_jason_reseq

-0.106

-0.436

low_pH_jason_reseq

-1.225

-1.472

NO_jason_reseq

-0.656

-0.824

B6_jason_reseq

0.089

-0.957

MHCII_jason_reseq

-0.529

-0.264

Isoniazid02

-1.793

-1.873

Rifampicin4

-0.341

-0.856

Ethambutol3

-1.694

-1.837

Meropenem3

-0.516

-1.348

Vancomycin16

-0.114

0.069

Rv2680_day32

0.184

0.735

H37Rv_KO_MarP

-1.158

-4.106

hypoxia_3wks

-0.61

-0.439

hypoxia_6wks

-0.038

1.328

glycerol

-0.647

-0.162

cholesterol

-0.054

3.246

AJ

0.0

-0.508

Bibs02

-0.24

-0.225

Bibs02c

0.203

-0.37

BL6

0.24

0.744

BL6a

0.27

0.083

BXD01

0.326

0.842

BXD010

0.149

0.005

BXD011

-0.009

-0.129

BXD03

0.4

0.494

BXD04

0.184

0.963

BXD05

0.183

0.632

BXD06

0.256

0.857

BXD07

0.171

0.555

BXD08

0.181

0.94

BXD09

0.209

0.455

CAST

-0.174

0.475

CCcont

0.155

0.355

DS01

0.068

0.358

DS02

0.769

0.091

DS04

0.859

0.842

DS0c

0.481

0.542

GP01

0.523

0.71

GP02

1.221

0.94

GP0c

0.135

0.227

NOD

0.277

-0.238

NZO

-0.214

-0.055

PWK

0.352

1.029

H37Rv_KO_CtpC

0.058

-0.394

H37Rv_KO_CtpD

0.875

-0.139

H37Rv_KO_Rv1272

0.362

-0.64

H37Rv_KO_SugABC

0.654

0.428

H37Rv_KO_MbtN

0.401

1.353

Trans05

0.908

0.584

macrophage_unactivated

0.615

-0.095

IL1

0.418

-0.231

Rapamycin

0.285

-0.307

Tcell

0.055

-0.459

GMCSF

0.222

0.33

IFNab

1.267

1.155

IFNg

0.738

0.27

IFNg_GMCSF1

0.49

0.465

Rv1432_day32

0.471

1.352

Rv1565c_day32

-0.649

-3.159

secA2_input

-0.21

-1.141

delta_Rv3594

0.014

-0.425

delta_Rv3717

0.177

0.311

delta_Rv3811

-0.217

0.0

delta_Rv0954

-0.226

-0.538

PonA1

0.335

0.104

EccD1_KO

-0.059

0.224

EspI_KO

-0.402

-0.037

PE35_KO

-0.773

-1.383

PPE68_KO

-0.419

-0.963

glycerol2

0.573

0.073

lignocerate

0.302

-0.239

oleate

-0.132

-1.418

phosphatidylcholine

-0.623

-1.675

acetate

1.385

0.595

glucAc

0.873

0.166

Rv0950ko

-0.072

0.296

Rv1096ko

1.179

1.113

Rv3684ko

1.009

0.943

delta_otsA_trehalose

0.304

-0.144