Top 10 genes with highest correlation to Rv3342/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2758c/vapB21 | (cc=0.528) | info on Rv2758c/vapB21 |
| Rv0499/- | (cc=0.5244) | info on Rv0499/- |
| Rv3559c/- | (cc=0.4943) | info on Rv3559c/- |
| Rv2871/vapB43 | (cc=0.4849) | info on Rv2871/vapB43 |
| Rv2851c/- | (cc=0.4734) | info on Rv2851c/- |
| Rv2240c/- | (cc=0.4705) | info on Rv2240c/- |
| Rv1412/ribC | (cc=0.4632) | info on Rv1412/ribC |
| Rv1252c/lprE | (cc=0.4579) | info on Rv1252c/lprE |
| Rv1793/esxN | (cc=0.4468) | info on Rv1793/esxN |
| Rv3545c/cyp125 | (cc=0.444) | info on Rv3545c/cyp125 |
Correlation of Rv3342/- with Rv2758c/vapB21
Normalized LFCs for Rv3342/-:
(description and provenance of datasets)
| Rv3342/- | Rv2758c/vapB21 | |
| Fe_supp_jason_reseq | 1.233 | 0.709 |
| low_pH_jason_reseq | -0.41 | -1.561 |
| NO_jason_reseq | 0.339 | -0.953 |
| B6_jason_reseq | -0.158 | -2.408 |
| MHCII_jason_reseq | -0.735 | -2.023 |
| Isoniazid02 | 0.389 | -0.383 |
| Rifampicin4 | -0.341 | 0.785 |
| Ethambutol3 | -0.263 | 0.27 |
| Meropenem3 | -0.133 | 1.269 |
| Vancomycin16 | -0.034 | 0.106 |
| Rv2680_day32 | -1.226 | -1.524 |
| H37Rv_KO_MarP | -0.135 | 1.456 |
| hypoxia_3wks | -0.578 | 0.0 |
| hypoxia_6wks | 0.238 | -0.77 |
| glycerol | -1.609 | -0.742 |
| cholesterol | -2.277 | -0.242 |
| AJ | 0.487 | -0.728 |
| Bibs02 | -1.976 | -1.396 |
| Bibs02c | -2.89 | -1.963 |
| BL6 | -1.272 | -0.604 |
| BL6a | -0.91 | -0.423 |
| BXD01 | -0.552 | 0.188 |
| BXD010 | 0.943 | -0.7 |
| BXD011 | -0.092 | 0.14 |
| BXD03 | -0.167 | -0.109 |
| BXD04 | -0.362 | -0.454 |
| BXD05 | 0.911 | -1.141 |
| BXD06 | 0.09 | 0.713 |
| BXD07 | -0.587 | 0.533 |
| BXD08 | 0.8 | -0.488 |
| BXD09 | 0.494 | 1.42 |
| CAST | -1.615 | -1.582 |
| CCcont | 0.974 | 1.808 |
| DS01 | -1.451 | -1.292 |
| DS02 | -1.078 | -2.04 |
| DS04 | -0.29 | -2.014 |
| DS0c | -1.075 | 0.313 |
| GP01 | 1.079 | 0.572 |
| GP02 | 0.056 | -0.781 |
| GP0c | 0.765 | -0.799 |
| NOD | 0.514 | -1.38 |
| NZO | -0.584 | -1.225 |
| PWK | -0.094 | -1.84 |
| H37Rv_KO_CtpC | -0.526 | 0.288 |
| H37Rv_KO_CtpD | -1.009 | -1.074 |
| H37Rv_KO_Rv1272 | -0.866 | 1.466 |
| H37Rv_KO_SugABC | -0.231 | -0.929 |
| H37Rv_KO_MbtN | 1.222 | -0.127 |
| Trans05 | -0.423 | -0.41 |
| macrophage_unactivated | 1.382 | 0.9 |
| IL1 | 0.833 | 0.0 |
| Rapamycin | 2.24 | 0.522 |
| Tcell | -0.244 | 1.166 |
| GMCSF | 1.716 | 1.7 |
| IFNab | 1.75 | 0.632 |
| IFNg | 0.371 | 0.762 |
| IFNg_GMCSF1 | 1.502 | -0.446 |
| Rv1432_day32 | 0.149 | 0.0 |
| Rv1565c_day32 | -1.919 | 0.0 |
| secA2_input | -0.899 | 1.739 |
| delta_Rv3594 | -0.479 | -2.164 |
| delta_Rv3717 | -1.432 | -1.194 |
| delta_Rv3811 | -0.926 | -2.318 |
| delta_Rv0954 | -3.177 | -1.043 |
| PonA1 | -0.207 | -0.256 |
| EccD1_KO | -0.401 | -1.51 |
| EspI_KO | -1.868 | -3.679 |
| PE35_KO | -1.024 | -1.339 |
| PPE68_KO | -0.742 | -1.328 |
| glycerol2 | 2.311 | 1.359 |
| lignocerate | 1.982 | 2.159 |
| oleate | 0.566 | -1.791 |
| phosphatidylcholine | 0.487 | 1.443 |
| acetate | 2.198 | 2.031 |
| glucAc | 2.134 | 2.565 |
| Rv0950ko | -1.553 | -0.739 |
| Rv1096ko | -1.378 | -0.582 |
| Rv3684ko | -0.727 | -0.305 |
| delta_otsA_trehalose | -0.457 | -1.336 |