Top 10 genes with highest correlation to Rv3293/pcd:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2062c/cobN | (cc=0.4643) | info on Rv2062c/cobN |
| Rv0488/- | (cc=0.4558) | info on Rv0488/- |
| Rv0906/- | (cc=0.432) | info on Rv0906/- |
| Rv3600c/- | (cc=0.4256) | info on Rv3600c/- |
| Rv2260/- | (cc=0.4095) | info on Rv2260/- |
| Rv0399c/lpqK | (cc=0.406) | info on Rv0399c/lpqK |
| Rv1997/ctpF | (cc=0.4035) | info on Rv1997/ctpF |
| Rv0269c/- | (cc=0.4027) | info on Rv0269c/- |
| Rv3191c/- | (cc=0.4001) | info on Rv3191c/- |
| Rv3175/- | (cc=0.3983) | info on Rv3175/- |
Correlation of Rv3293/pcd with Rv2260/-
Normalized LFCs for Rv3293/pcd:
(description and provenance of datasets)
| Rv3293/pcd | Rv2260/- | |
| Fe_supp_jason_reseq | -0.624 | 0.344 |
| low_pH_jason_reseq | 0.216 | -1.266 |
| NO_jason_reseq | 0.339 | 0.152 |
| B6_jason_reseq | 1.237 | 1.759 |
| MHCII_jason_reseq | 0.486 | 1.227 |
| Isoniazid02 | -1.072 | -0.247 |
| Rifampicin4 | 0.024 | -0.46 |
| Ethambutol3 | -0.989 | -0.57 |
| Meropenem3 | -0.474 | -0.63 |
| Vancomycin16 | -0.531 | 0.0 |
| Rv2680_day32 | 0.49 | 1.332 |
| H37Rv_KO_MarP | -0.363 | 0.0 |
| hypoxia_3wks | -1.037 | -0.594 |
| hypoxia_6wks | -0.52 | -0.246 |
| glycerol | -0.607 | 1.709 |
| cholesterol | -0.222 | 0.302 |
| AJ | -0.118 | -0.373 |
| Bibs02 | 0.511 | 1.48 |
| Bibs02c | 0.859 | 0.74 |
| BL6 | -0.66 | -0.856 |
| BL6a | 0.178 | 0.456 |
| BXD01 | -0.052 | -1.427 |
| BXD010 | -0.038 | -2.103 |
| BXD011 | -0.682 | 0.178 |
| BXD03 | -0.033 | 0.542 |
| BXD04 | -0.397 | -0.638 |
| BXD05 | -0.294 | -0.26 |
| BXD06 | 0.033 | -0.521 |
| BXD07 | -0.099 | 0.334 |
| BXD08 | 0.0 | -0.657 |
| BXD09 | -0.508 | -0.664 |
| CAST | 0.185 | -1.517 |
| CCcont | -0.429 | -0.442 |
| DS01 | 0.849 | 0.358 |
| DS02 | 0.356 | 0.277 |
| DS04 | 0.156 | -0.44 |
| DS0c | -0.284 | 0.25 |
| GP01 | -0.24 | 0.184 |
| GP02 | -0.586 | -0.011 |
| GP0c | 0.146 | 0.447 |
| NOD | -0.69 | 1.118 |
| NZO | -1.169 | -1.704 |
| PWK | -0.602 | -0.728 |
| H37Rv_KO_CtpC | 0.448 | 0.022 |
| H37Rv_KO_CtpD | 0.537 | 1.372 |
| H37Rv_KO_Rv1272 | -0.274 | -0.523 |
| H37Rv_KO_SugABC | 0.239 | 0.271 |
| H37Rv_KO_MbtN | 0.252 | 1.277 |
| Trans05 | 0.112 | -0.111 |
| macrophage_unactivated | -0.234 | -1.471 |
| IL1 | -0.11 | -0.522 |
| Rapamycin | 0.163 | 2.105 |
| Tcell | -0.56 | -0.055 |
| GMCSF | 0.116 | 0.296 |
| IFNab | -0.224 | -0.257 |
| IFNg | -0.516 | -0.045 |
| IFNg_GMCSF1 | 0.085 | 0.94 |
| Rv1432_day32 | 0.945 | -0.164 |
| Rv1565c_day32 | 0.542 | 0.583 |
| secA2_input | 0.014 | -2.819 |
| delta_Rv3594 | -0.806 | 0.324 |
| delta_Rv3717 | 0.093 | -1.258 |
| delta_Rv3811 | -0.813 | -1.324 |
| delta_Rv0954 | -0.669 | -0.935 |
| PonA1 | -0.563 | -0.45 |
| EccD1_KO | 0.178 | 0.839 |
| EspI_KO | 0.605 | -0.493 |
| PE35_KO | -0.053 | 0.198 |
| PPE68_KO | -0.147 | 1.059 |
| glycerol2 | -0.286 | -1.307 |
| lignocerate | 0.0 | -0.591 |
| oleate | -0.147 | -1.517 |
| phosphatidylcholine | -0.097 | -1.13 |
| acetate | 0.69 | -0.652 |
| glucAc | 0.601 | 0.718 |
| Rv0950ko | 0.392 | 0.627 |
| Rv1096ko | 1.493 | 2.147 |
| Rv3684ko | 0.357 | 2.129 |
| delta_otsA_trehalose | -0.461 | -0.068 |