Top 10 genes with highest correlation to Rv3235/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0630c/recB | (cc=0.4396) | info on Rv0630c/recB |
| Rv0960/vapC9 | (cc=0.427) | info on Rv0960/vapC9 |
| Rv2066/cobI | (cc=0.3785) | info on Rv2066/cobI |
| Rv1001/arcA | (cc=0.3773) | info on Rv1001/arcA |
| Rv1759c/wag22 | (cc=0.3737) | info on Rv1759c/wag22 |
| Rv3026c/- | (cc=0.3731) | info on Rv3026c/- |
| Rv3084/lipR | (cc=0.3616) | info on Rv3084/lipR |
| Rv0631c/recC | (cc=0.3559) | info on Rv0631c/recC |
| Rv0613c/- | (cc=0.3504) | info on Rv0613c/- |
| Rv1867/- | (cc=0.3475) | info on Rv1867/- |
Correlation of Rv3235/- with Rv0630c/recB
Normalized LFCs for Rv3235/-:
(description and provenance of datasets)
| Rv3235/- | Rv0630c/recB | |
| Fe_supp_jason_reseq | -2.433 | -0.497 |
| low_pH_jason_reseq | -1.323 | -0.893 |
| NO_jason_reseq | -1.25 | 0.0 |
| B6_jason_reseq | -1.305 | -0.433 |
| MHCII_jason_reseq | -0.674 | 0.085 |
| Isoniazid02 | -0.317 | 0.691 |
| Rifampicin4 | 0.994 | 0.095 |
| Ethambutol3 | -0.101 | 0.331 |
| Meropenem3 | -0.066 | 0.218 |
| Vancomycin16 | 0.034 | 0.093 |
| Rv2680_day32 | 1.05 | 0.407 |
| H37Rv_KO_MarP | 0.586 | 0.052 |
| hypoxia_3wks | -1.531 | -0.518 |
| hypoxia_6wks | -0.509 | -0.662 |
| glycerol | 0.629 | 0.625 |
| cholesterol | 0.44 | 0.631 |
| AJ | -0.748 | 0.634 |
| Bibs02 | 0.735 | 0.738 |
| Bibs02c | -0.068 | 0.411 |
| BL6 | -1.734 | -0.862 |
| BL6a | 0.201 | -0.024 |
| BXD01 | -0.162 | -0.897 |
| BXD010 | -1.012 | -0.882 |
| BXD011 | -1.873 | -0.792 |
| BXD03 | 0.935 | -0.7 |
| BXD04 | -1.191 | -0.318 |
| BXD05 | -0.918 | -0.57 |
| BXD06 | -1.285 | -0.773 |
| BXD07 | -0.406 | -0.773 |
| BXD08 | -1.556 | -0.493 |
| BXD09 | -1.018 | -0.596 |
| CAST | -0.232 | 0.0 |
| CCcont | -0.64 | -0.928 |
| DS01 | 0.601 | 0.814 |
| DS02 | 1.027 | 0.912 |
| DS04 | 0.916 | 0.95 |
| DS0c | -1.039 | -0.162 |
| GP01 | -0.054 | 1.094 |
| GP02 | 0.464 | -0.698 |
| GP0c | 0.907 | -0.927 |
| NOD | 0.0 | -0.317 |
| NZO | -1.058 | 0.545 |
| PWK | 0.611 | 0.159 |
| H37Rv_KO_CtpC | 0.034 | -0.631 |
| H37Rv_KO_CtpD | 0.177 | -0.288 |
| H37Rv_KO_Rv1272 | -0.336 | -1.221 |
| H37Rv_KO_SugABC | 0.54 | 0.669 |
| H37Rv_KO_MbtN | 0.414 | 1.308 |
| Trans05 | -1.866 | -0.627 |
| macrophage_unactivated | -0.189 | 0.101 |
| IL1 | 4.9 | 0.54 |
| Rapamycin | -0.577 | 0.288 |
| Tcell | 0.0 | -0.743 |
| GMCSF | 1.077 | 0.557 |
| IFNab | -0.886 | 0.19 |
| IFNg | -2.443 | -0.412 |
| IFNg_GMCSF1 | 1.486 | 1.163 |
| Rv1432_day32 | 0.0 | 0.297 |
| Rv1565c_day32 | 0.55 | 0.31 |
| secA2_input | -1.882 | -0.261 |
| delta_Rv3594 | 0.06 | -0.254 |
| delta_Rv3717 | 0.31 | -0.232 |
| delta_Rv3811 | -0.819 | -0.526 |
| delta_Rv0954 | 0.947 | -0.994 |
| PonA1 | -0.813 | -0.684 |
| EccD1_KO | -0.289 | -0.345 |
| EspI_KO | 0.322 | -0.362 |
| PE35_KO | 0.636 | 0.341 |
| PPE68_KO | 0.726 | 0.374 |
| glycerol2 | -0.796 | -0.594 |
| lignocerate | -0.24 | -0.943 |
| oleate | -0.481 | -0.119 |
| phosphatidylcholine | -0.445 | -0.471 |
| acetate | 0.82 | -0.83 |
| glucAc | 0.298 | -0.899 |
| Rv0950ko | 0.633 | 0.205 |
| Rv1096ko | 0.787 | 1.671 |
| Rv3684ko | 0.341 | 0.835 |
| delta_otsA_trehalose | -0.939 | -0.689 |