Top 10 genes with highest correlation to Rv3224B/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3224A/- | (cc=0.5299) | info on Rv3224A/- |
| Rv3335c/- | (cc=0.522) | info on Rv3335c/- |
| Rv2077A/- | (cc=0.5179) | info on Rv2077A/- |
| Rv0060/- | (cc=0.5046) | info on Rv0060/- |
| Rv3819/- | (cc=0.4792) | info on Rv3819/- |
| Rv3127/- | (cc=0.4743) | info on Rv3127/- |
| Rv2821c/- | (cc=0.473) | info on Rv2821c/- |
| Rv0312/- | (cc=0.4683) | info on Rv0312/- |
| Rv0042c/- | (cc=0.4667) | info on Rv0042c/- |
| Rv1987/- | (cc=0.4655) | info on Rv1987/- |
Correlation of Rv3224B/- with Rv3335c/-
Normalized LFCs for Rv3224B/-:
(description and provenance of datasets)
| Rv3224B/- | Rv3335c/- | |
| Fe_supp_jason_reseq | 1.613 | -1.986 |
| low_pH_jason_reseq | 0.582 | -0.249 |
| NO_jason_reseq | 1.003 | -0.462 |
| B6_jason_reseq | 1.336 | 1.534 |
| MHCII_jason_reseq | -0.043 | -0.724 |
| Isoniazid02 | 0.0 | 0.313 |
| Rifampicin4 | 0.43 | 0.0 |
| Ethambutol3 | -0.204 | 0.04 |
| Meropenem3 | 2.432 | 0.152 |
| Vancomycin16 | -0.202 | 0.493 |
| Rv2680_day32 | 1.574 | -0.067 |
| H37Rv_KO_MarP | -0.34 | -0.375 |
| hypoxia_3wks | -1.798 | -1.623 |
| hypoxia_6wks | -0.764 | -1.142 |
| glycerol | -1.318 | 0.774 |
| cholesterol | -0.644 | 0.221 |
| AJ | 0.338 | 0.413 |
| Bibs02 | 1.041 | 0.829 |
| Bibs02c | 0.32 | -0.411 |
| BL6 | 2.331 | 0.726 |
| BL6a | 0.016 | -0.218 |
| BXD01 | 0.306 | 0.164 |
| BXD010 | -0.741 | -0.783 |
| BXD011 | -0.167 | -0.25 |
| BXD03 | 0.361 | -2.177 |
| BXD04 | 0.999 | -1.184 |
| BXD05 | -0.022 | -0.289 |
| BXD06 | -0.239 | -0.125 |
| BXD07 | 0.12 | -0.458 |
| BXD08 | 0.422 | -0.413 |
| BXD09 | -0.917 | -0.859 |
| CAST | 0.384 | -0.37 |
| CCcont | 0.0 | 0.41 |
| DS01 | -0.905 | -0.984 |
| DS02 | 0.156 | -0.72 |
| DS04 | -1.487 | -1.858 |
| DS0c | -1.483 | -2.624 |
| GP01 | 0.393 | 0.085 |
| GP02 | -1.146 | -1.089 |
| GP0c | 0.18 | -0.255 |
| NOD | -0.037 | 0.742 |
| NZO | 0.829 | 0.764 |
| PWK | -0.134 | 0.963 |
| H37Rv_KO_CtpC | -1.011 | -0.538 |
| H37Rv_KO_CtpD | 2.225 | 2.842 |
| H37Rv_KO_Rv1272 | -1.207 | 0.434 |
| H37Rv_KO_SugABC | -0.776 | -0.481 |
| H37Rv_KO_MbtN | 0.961 | 1.923 |
| Trans05 | 0.957 | -0.06 |
| macrophage_unactivated | 1.285 | -1.37 |
| IL1 | -1.99 | -1.777 |
| Rapamycin | -0.546 | -2.262 |
| Tcell | 1.942 | -0.821 |
| GMCSF | -0.784 | 2.445 |
| IFNab | -0.426 | -0.762 |
| IFNg | 0.583 | -0.406 |
| IFNg_GMCSF1 | -1.2 | -1.364 |
| Rv1432_day32 | 0.321 | -0.213 |
| Rv1565c_day32 | -1.093 | -2.671 |
| secA2_input | 0.167 | 0.371 |
| delta_Rv3594 | 0.382 | 0.33 |
| delta_Rv3717 | -1.565 | 0.832 |
| delta_Rv3811 | 1.008 | 1.487 |
| delta_Rv0954 | 0.27 | 0.199 |
| PonA1 | -0.851 | 1.482 |
| EccD1_KO | -1.092 | -0.776 |
| EspI_KO | -2.738 | -0.174 |
| PE35_KO | -2.033 | 1.24 |
| PPE68_KO | -0.749 | 0.422 |
| glycerol2 | 2.191 | 3.013 |
| lignocerate | 2.565 | 2.934 |
| oleate | -1.167 | -0.961 |
| phosphatidylcholine | 2.333 | 2.178 |
| acetate | 3.501 | 3.769 |
| glucAc | 2.476 | 3.181 |
| Rv0950ko | 0.112 | -0.274 |
| Rv1096ko | 0.531 | 0.733 |
| Rv3684ko | 0.062 | -0.455 |
| delta_otsA_trehalose | -0.835 | -1.175 |