Top 10 genes with highest correlation to Rv3224B/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3224A/- | (cc=0.5299) | info on Rv3224A/- |
| Rv3335c/- | (cc=0.522) | info on Rv3335c/- |
| Rv2077A/- | (cc=0.5179) | info on Rv2077A/- |
| Rv0060/- | (cc=0.5046) | info on Rv0060/- |
| Rv3819/- | (cc=0.4792) | info on Rv3819/- |
| Rv3127/- | (cc=0.4743) | info on Rv3127/- |
| Rv2821c/- | (cc=0.473) | info on Rv2821c/- |
| Rv0312/- | (cc=0.4683) | info on Rv0312/- |
| Rv0042c/- | (cc=0.4667) | info on Rv0042c/- |
| Rv1987/- | (cc=0.4655) | info on Rv1987/- |
Correlation of Rv3224B/- with Rv3224A/-
Normalized LFCs for Rv3224B/-:
(description and provenance of datasets)
| Rv3224B/- | Rv3224A/- | |
| Fe_supp_jason_reseq | 1.613 | 2.797 |
| low_pH_jason_reseq | 0.582 | -0.599 |
| NO_jason_reseq | 1.003 | -1.725 |
| B6_jason_reseq | 1.336 | -2.259 |
| MHCII_jason_reseq | -0.043 | -1.515 |
| Isoniazid02 | 0.0 | 0.358 |
| Rifampicin4 | 0.43 | -1.013 |
| Ethambutol3 | -0.204 | -0.423 |
| Meropenem3 | 2.432 | -0.025 |
| Vancomycin16 | -0.202 | 0.0 |
| Rv2680_day32 | 1.574 | 2.963 |
| H37Rv_KO_MarP | -0.34 | 0.035 |
| hypoxia_3wks | -1.798 | -1.758 |
| hypoxia_6wks | -0.764 | -1.142 |
| glycerol | -1.318 | -1.769 |
| cholesterol | -0.644 | 0.329 |
| AJ | 0.338 | -1.153 |
| Bibs02 | 1.041 | -1.999 |
| Bibs02c | 0.32 | -1.238 |
| BL6 | 2.331 | 1.287 |
| BL6a | 0.016 | -0.366 |
| BXD01 | 0.306 | 1.298 |
| BXD010 | -0.741 | -0.074 |
| BXD011 | -0.167 | 0.2 |
| BXD03 | 0.361 | 1.017 |
| BXD04 | 0.999 | -1.167 |
| BXD05 | -0.022 | -0.249 |
| BXD06 | -0.239 | -0.293 |
| BXD07 | 0.12 | 0.983 |
| BXD08 | 0.422 | 0.846 |
| BXD09 | -0.917 | -0.213 |
| CAST | 0.384 | -1.482 |
| CCcont | 0.0 | 2.065 |
| DS01 | -0.905 | 0.932 |
| DS02 | 0.156 | -2.757 |
| DS04 | -1.487 | 0.84 |
| DS0c | -1.483 | -2.203 |
| GP01 | 0.393 | 1.272 |
| GP02 | -1.146 | -0.91 |
| GP0c | 0.18 | 1.505 |
| NOD | -0.037 | -1.826 |
| NZO | 0.829 | -2.728 |
| PWK | -0.134 | -1.718 |
| H37Rv_KO_CtpC | -1.011 | -2.222 |
| H37Rv_KO_CtpD | 2.225 | 2.993 |
| H37Rv_KO_Rv1272 | -1.207 | 1.746 |
| H37Rv_KO_SugABC | -0.776 | -1.083 |
| H37Rv_KO_MbtN | 0.961 | -1.127 |
| Trans05 | 0.957 | -0.649 |
| macrophage_unactivated | 1.285 | 0.0 |
| IL1 | -1.99 | -4.108 |
| Rapamycin | -0.546 | -1.182 |
| Tcell | 1.942 | 1.147 |
| GMCSF | -0.784 | 0.457 |
| IFNab | -0.426 | 2.038 |
| IFNg | 0.583 | 0.676 |
| IFNg_GMCSF1 | -1.2 | -0.619 |
| Rv1432_day32 | 0.321 | 0.0 |
| Rv1565c_day32 | -1.093 | -1.403 |
| secA2_input | 0.167 | 0.16 |
| delta_Rv3594 | 0.382 | 3.02 |
| delta_Rv3717 | -1.565 | 0.405 |
| delta_Rv3811 | 1.008 | 3.359 |
| delta_Rv0954 | 0.27 | -1.742 |
| PonA1 | -0.851 | -1.714 |
| EccD1_KO | -1.092 | 0.076 |
| EspI_KO | -2.738 | -2.125 |
| PE35_KO | -2.033 | -0.353 |
| PPE68_KO | -0.749 | -0.387 |
| glycerol2 | 2.191 | 3.333 |
| lignocerate | 2.565 | 3.899 |
| oleate | -1.167 | 0.0 |
| phosphatidylcholine | 2.333 | 3.332 |
| acetate | 3.501 | 4.833 |
| glucAc | 2.476 | 3.575 |
| Rv0950ko | 0.112 | 3.015 |
| Rv1096ko | 0.531 | 2.91 |
| Rv3684ko | 0.062 | 3.331 |
| delta_otsA_trehalose | -0.835 | -2.329 |