Top 10 genes with highest correlation to Rv3224/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0454/- | (cc=0.5311) | info on Rv0454/- |
| Rv0644c/mmaA2 | (cc=0.528) | info on Rv0644c/mmaA2 |
| Rv0048c/- | (cc=0.5093) | info on Rv0048c/- |
| Rv3158/nuoN | (cc=0.5076) | info on Rv3158/nuoN |
| Rv3429/PPE59 | (cc=0.5051) | info on Rv3429/PPE59 |
| Rv1520/- | (cc=0.4988) | info on Rv1520/- |
| Rv2107/PE22 | (cc=0.4955) | info on Rv2107/PE22 |
| Rv3842c/glpQ1 | (cc=0.4854) | info on Rv3842c/glpQ1 |
| Rv1866/- | (cc=0.4848) | info on Rv1866/- |
| Rv1550/fadD11 | (cc=0.4841) | info on Rv1550/fadD11 |
Correlation of Rv3224/- with Rv0454/-
Normalized LFCs for Rv3224/-:
(description and provenance of datasets)
| Rv3224/- | Rv0454/- | |
| Fe_supp_jason_reseq | -0.543 | -0.603 |
| low_pH_jason_reseq | -0.482 | -1.353 |
| NO_jason_reseq | -0.402 | -0.701 |
| B6_jason_reseq | 0.656 | -0.519 |
| MHCII_jason_reseq | 0.222 | -0.323 |
| Isoniazid02 | 0.365 | 2.137 |
| Rifampicin4 | -0.116 | 0.29 |
| Ethambutol3 | 1.892 | 4.387 |
| Meropenem3 | 0.788 | 0.593 |
| Vancomycin16 | 0.048 | 0.241 |
| Rv2680_day32 | 0.111 | 0.579 |
| H37Rv_KO_MarP | -0.175 | -0.357 |
| hypoxia_3wks | 0.183 | 0.407 |
| hypoxia_6wks | 0.426 | 0.787 |
| glycerol | -0.933 | 0.483 |
| cholesterol | -0.451 | -1.043 |
| AJ | -0.145 | 0.351 |
| Bibs02 | -0.253 | 0.217 |
| Bibs02c | 0.177 | -0.767 |
| BL6 | 0.468 | -0.395 |
| BL6a | 0.26 | -0.458 |
| BXD01 | 0.571 | 0.155 |
| BXD010 | 0.657 | -0.053 |
| BXD011 | 0.51 | -0.006 |
| BXD03 | 0.196 | -0.163 |
| BXD04 | 0.529 | 0.049 |
| BXD05 | 0.464 | 0.47 |
| BXD06 | 0.582 | 0.069 |
| BXD07 | 0.655 | 0.017 |
| BXD08 | 0.661 | 0.079 |
| BXD09 | 0.443 | -0.202 |
| CAST | 0.409 | -0.364 |
| CCcont | -0.314 | -0.12 |
| DS01 | 0.08 | -0.339 |
| DS02 | 0.438 | 0.154 |
| DS04 | 0.194 | 0.661 |
| DS0c | -0.357 | 0.121 |
| GP01 | 1.121 | 0.632 |
| GP02 | 0.168 | -0.254 |
| GP0c | 0.217 | -0.778 |
| NOD | 0.132 | 0.159 |
| NZO | 0.051 | 0.126 |
| PWK | -0.202 | 0.358 |
| H37Rv_KO_CtpC | 0.261 | 0.866 |
| H37Rv_KO_CtpD | 0.824 | 0.065 |
| H37Rv_KO_Rv1272 | 0.231 | 1.187 |
| H37Rv_KO_SugABC | 0.992 | 1.824 |
| H37Rv_KO_MbtN | 0.594 | -0.202 |
| Trans05 | 0.5 | 1.495 |
| macrophage_unactivated | -0.496 | -1.382 |
| IL1 | -0.205 | -1.053 |
| Rapamycin | -0.402 | -0.601 |
| Tcell | -0.134 | -0.085 |
| GMCSF | -0.193 | 0.15 |
| IFNab | -0.124 | 0.094 |
| IFNg | -0.679 | -1.04 |
| IFNg_GMCSF1 | -0.399 | 0.195 |
| Rv1432_day32 | 0.679 | 0.873 |
| Rv1565c_day32 | -0.259 | -0.641 |
| secA2_input | -0.091 | 0.346 |
| delta_Rv3594 | 0.239 | 0.239 |
| delta_Rv3717 | 0.539 | -0.891 |
| delta_Rv3811 | 0.571 | 0.068 |
| delta_Rv0954 | -0.443 | -0.317 |
| PonA1 | -0.11 | -0.431 |
| EccD1_KO | -0.02 | -0.681 |
| EspI_KO | 0.588 | -0.764 |
| PE35_KO | 0.277 | -0.473 |
| PPE68_KO | 0.378 | -1.024 |
| glycerol2 | 0.199 | -0.014 |
| lignocerate | 0.33 | -0.057 |
| oleate | 0.617 | -0.143 |
| phosphatidylcholine | 0.192 | -0.371 |
| acetate | -0.043 | -0.514 |
| glucAc | -0.299 | -0.65 |
| Rv0950ko | -0.145 | -0.359 |
| Rv1096ko | -0.13 | -0.455 |
| Rv3684ko | 0.272 | -0.285 |
| delta_otsA_trehalose | 0.139 | 1.032 |