TnSeqCorr

Top 10 genes with highest correlation to Rv3215/entC:

update plotcorrelationlink to info on gene
Rv2461c/clpP1 (cc=0.6483) info on Rv2461c/clpP1
Rv2454c/- (cc=0.6468) info on Rv2454c/-
Rv3680/- (cc=0.5995) info on Rv3680/-
Rv2455c/- (cc=0.561) info on Rv2455c/-
Rv1540/- (cc=0.532) info on Rv1540/-
Rv1631/coaE (cc=0.512) info on Rv1631/coaE
Rv3902c/- (cc=0.4988) info on Rv3902c/-
Rv3679/- (cc=0.498) info on Rv3679/-
Rv2837c/- (cc=0.4948) info on Rv2837c/-
Rv2221c/glnE (cc=0.4901) info on Rv2221c/glnE

Correlation of Rv3215/entC with Rv3680/-

Normalized LFCs for Rv3215/entC:
(description and provenance of datasets)
Rv3215/entCRv3680/-
Fe_supp_jason_reseq

0.598

1.689

low_pH_jason_reseq

0.0

1.673

NO_jason_reseq

0.0

0.0

B6_jason_reseq

0.0

0.0

MHCII_jason_reseq

0.0

0.0

Isoniazid02

0.0

-1.072

Rifampicin4

0.0

-0.474

Ethambutol3

0.0

-0.59

Meropenem3

0.0

-0.21

Vancomycin16

0.0

-0.464

Rv2680_day32

0.0

0.0

H37Rv_KO_MarP

-0.535

-0.766

hypoxia_3wks

0.0

-0.55

hypoxia_6wks

0.0

-0.288

glycerol

0.0

2.455

cholesterol

0.0

1.612

AJ

0.0

0.0

Bibs02

0.0

1.015

Bibs02c

0.0

1.822

BL6

0.0

0.0

BL6a

0.0

1.812

BXD01

0.0

0.358

BXD010

0.0

0.128

BXD011

0.0

1.109

BXD03

0.0

0.75

BXD04

0.0

0.34

BXD05

0.0

0.369

BXD06

0.0

1.035

BXD07

0.0

0.38

BXD08

0.0

0.253

BXD09

0.0

0.69

CAST

0.0

0.0

CCcont

0.0

1.765

DS01

0.0

0.83

DS02

0.0

0.217

DS04

0.0

1.301

DS0c

0.0

0.413

GP01

0.0

0.0

GP02

0.083

0.0

GP0c

0.0

0.0

NOD

0.0

0.0

NZO

0.0

0.0

PWK

0.0

0.0

H37Rv_KO_CtpC

0.0

0.162

H37Rv_KO_CtpD

0.0

0.445

H37Rv_KO_Rv1272

0.0

0.0

H37Rv_KO_SugABC

0.0

0.768

H37Rv_KO_MbtN

0.0

0.691

Trans05

0.0

0.0

macrophage_unactivated

0.0

0.436

IL1

0.0

0.0

Rapamycin

0.0

0.0

Tcell

0.0

0.857

GMCSF

0.0

0.0

IFNab

0.0

0.0

IFNg

0.0

0.0

IFNg_GMCSF1

0.0

0.0

Rv1432_day32

0.0

0.0

Rv1565c_day32

0.0

0.0

secA2_input

-2.237

-2.069

delta_Rv3594

0.34

1.895

delta_Rv3717

0.145

3.237

delta_Rv3811

0.171

2.787

delta_Rv0954

-0.34

0.375

PonA1

1.222

1.599

EccD1_KO

0.0

0.635

EspI_KO

0.0

0.878

PE35_KO

0.0

0.735

PPE68_KO

0.0

1.245

glycerol2

0.0

-0.193

lignocerate

0.0

-0.168

oleate

0.0

-0.196

phosphatidylcholine

0.0

-0.193

acetate

0.0

0.743

glucAc

0.0

0.462

Rv0950ko

-1.143

-1.9

Rv1096ko

-0.347

-2.111

Rv3684ko

-1.241

-2.663

delta_otsA_trehalose

0.0

0.895