Top 10 genes with highest correlation to Rv3183/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3142c/- | (cc=0.5864) | info on Rv3142c/- |
| Rv2841c/nusA | (cc=0.535) | info on Rv2841c/nusA |
| Rv3446c/- | (cc=0.5346) | info on Rv3446c/- |
| Rv1116/- | (cc=0.4933) | info on Rv1116/- |
| Rv2287/yjcE | (cc=0.4737) | info on Rv2287/yjcE |
| Rv0293c/- | (cc=0.4713) | info on Rv0293c/- |
| Rv2993c/- | (cc=0.4683) | info on Rv2993c/- |
| Rv2842c/- | (cc=0.4668) | info on Rv2842c/- |
| Rv2853/PE_PGRS48 | (cc=0.4504) | info on Rv2853/PE_PGRS48 |
| Rv3419c/gcp | (cc=0.4365) | info on Rv3419c/gcp |
Correlation of Rv3183/- with Rv3142c/-
Normalized LFCs for Rv3183/-:
(description and provenance of datasets)
| Rv3183/- | Rv3142c/- | |
| Fe_supp_jason_reseq | -0.652 | -0.278 |
| low_pH_jason_reseq | 0.174 | -0.852 |
| NO_jason_reseq | 0.711 | 0.399 |
| B6_jason_reseq | -1.344 | -0.254 |
| MHCII_jason_reseq | -1.988 | -0.69 |
| Isoniazid02 | 0.237 | -0.172 |
| Rifampicin4 | 0.165 | 0.317 |
| Ethambutol3 | 0.019 | 0.116 |
| Meropenem3 | 0.798 | 0.019 |
| Vancomycin16 | 0.432 | 0.26 |
| Rv2680_day32 | -3.957 | -0.971 |
| H37Rv_KO_MarP | 0.375 | -0.155 |
| hypoxia_3wks | -0.132 | 0.024 |
| hypoxia_6wks | -0.9 | -0.432 |
| glycerol | -1.59 | -0.825 |
| cholesterol | 0.103 | 0.155 |
| AJ | 0.0 | 1.219 |
| Bibs02 | -0.427 | 0.257 |
| Bibs02c | 2.26 | 1.422 |
| BL6 | -0.015 | 0.821 |
| BL6a | 2.561 | 1.653 |
| BXD01 | 0.599 | 0.919 |
| BXD010 | 1.332 | 1.183 |
| BXD011 | 0.774 | 1.105 |
| BXD03 | 1.004 | 0.324 |
| BXD04 | -0.974 | 0.606 |
| BXD05 | 0.284 | 1.049 |
| BXD06 | 1.015 | 0.946 |
| BXD07 | 1.003 | 1.398 |
| BXD08 | 0.11 | 0.626 |
| BXD09 | 0.067 | 0.913 |
| CAST | -0.919 | 1.303 |
| CCcont | 1.1 | 0.784 |
| DS01 | 0.636 | 0.79 |
| DS02 | -0.83 | 0.521 |
| DS04 | -0.423 | 0.512 |
| DS0c | -1.824 | 0.793 |
| GP01 | -0.946 | 0.674 |
| GP02 | -1.137 | 0.388 |
| GP0c | -1.13 | 0.362 |
| NOD | 0.055 | 1.084 |
| NZO | 0.837 | 0.64 |
| PWK | -0.34 | 1.186 |
| H37Rv_KO_CtpC | 1.783 | 1.517 |
| H37Rv_KO_CtpD | 2.106 | 1.639 |
| H37Rv_KO_Rv1272 | 1.731 | 1.18 |
| H37Rv_KO_SugABC | -1.796 | 1.178 |
| H37Rv_KO_MbtN | 0.153 | 1.207 |
| Trans05 | 0.34 | 1.301 |
| macrophage_unactivated | -2.427 | 0.104 |
| IL1 | -3.263 | -0.872 |
| Rapamycin | -2.022 | -0.353 |
| Tcell | -1.372 | -0.186 |
| GMCSF | -2.743 | -0.655 |
| IFNab | -1.273 | -0.871 |
| IFNg | -1.801 | 0.326 |
| IFNg_GMCSF1 | -2.215 | -0.088 |
| Rv1432_day32 | 0.18 | -0.061 |
| Rv1565c_day32 | 1.024 | 0.204 |
| secA2_input | -1.745 | 0.059 |
| delta_Rv3594 | -0.257 | -0.268 |
| delta_Rv3717 | 0.688 | -0.294 |
| delta_Rv3811 | 1.277 | 0.092 |
| delta_Rv0954 | -0.172 | -0.322 |
| PonA1 | 1.088 | 0.167 |
| EccD1_KO | -0.059 | -0.342 |
| EspI_KO | -0.77 | 0.211 |
| PE35_KO | -0.662 | 0.3 |
| PPE68_KO | 0.058 | 0.218 |
| glycerol2 | -1.078 | -0.092 |
| lignocerate | -0.075 | 0.754 |
| oleate | -0.659 | -0.411 |
| phosphatidylcholine | -0.3 | -0.022 |
| acetate | -0.813 | 0.213 |
| glucAc | -0.263 | 0.495 |
| Rv0950ko | 1.544 | 1.462 |
| Rv1096ko | 1.007 | 0.072 |
| Rv3684ko | 0.58 | 0.229 |
| delta_otsA_trehalose | -0.066 | 0.14 |