Top 10 genes with highest correlation to Rv3074/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1939/- | (cc=0.4927) | info on Rv1939/- |
| Rv3195/- | (cc=0.4689) | info on Rv3195/- |
| Rv2980/- | (cc=0.4557) | info on Rv2980/- |
| Rv0869c/moaA2 | (cc=0.4552) | info on Rv0869c/moaA2 |
| Rv3055/- | (cc=0.4466) | info on Rv3055/- |
| Rv2504c/scoA | (cc=0.4309) | info on Rv2504c/scoA |
| Rv3057c/- | (cc=0.43) | info on Rv3057c/- |
| Rv2998/- | (cc=0.4283) | info on Rv2998/- |
| Rv2251/- | (cc=0.4239) | info on Rv2251/- |
| Rv0690c/- | (cc=0.4227) | info on Rv0690c/- |
Correlation of Rv3074/- with Rv3195/-
Normalized LFCs for Rv3074/-:
(description and provenance of datasets)
| Rv3074/- | Rv3195/- | |
| Fe_supp_jason_reseq | -0.12 | 0.068 |
| low_pH_jason_reseq | 0.293 | 0.125 |
| NO_jason_reseq | -0.252 | 0.142 |
| B6_jason_reseq | -0.118 | 0.376 |
| MHCII_jason_reseq | -0.113 | 0.468 |
| Isoniazid02 | 0.332 | -0.016 |
| Rifampicin4 | 1.438 | 0.206 |
| Ethambutol3 | 0.348 | 0.013 |
| Meropenem3 | 0.313 | 0.212 |
| Vancomycin16 | 0.844 | 0.257 |
| Rv2680_day32 | 0.361 | 0.952 |
| H37Rv_KO_MarP | 0.144 | 0.154 |
| hypoxia_3wks | 0.494 | -0.475 |
| hypoxia_6wks | 0.871 | -0.021 |
| glycerol | -0.704 | -0.246 |
| cholesterol | 0.01 | -0.294 |
| AJ | 0.276 | 0.094 |
| Bibs02 | -0.657 | -1.203 |
| Bibs02c | -0.483 | -0.508 |
| BL6 | -0.361 | -0.474 |
| BL6a | -0.121 | -1.076 |
| BXD01 | 0.543 | -0.668 |
| BXD010 | -0.25 | -0.922 |
| BXD011 | -0.098 | -0.433 |
| BXD03 | -0.5 | -0.703 |
| BXD04 | -0.833 | -0.257 |
| BXD05 | 0.195 | -0.39 |
| BXD06 | -0.168 | -0.81 |
| BXD07 | -0.162 | -0.841 |
| BXD08 | 0.219 | -0.672 |
| BXD09 | -0.447 | -0.451 |
| CAST | -0.234 | -0.108 |
| CCcont | 0.117 | -0.354 |
| DS01 | -1.109 | -0.729 |
| DS02 | 0.047 | -0.134 |
| DS04 | -0.396 | 0.41 |
| DS0c | 0.383 | 0.64 |
| GP01 | 0.036 | -0.591 |
| GP02 | -0.884 | -0.622 |
| GP0c | -0.413 | -1.434 |
| NOD | -0.583 | -0.205 |
| NZO | -0.302 | 0.331 |
| PWK | 0.168 | -0.27 |
| H37Rv_KO_CtpC | 0.149 | -0.076 |
| H37Rv_KO_CtpD | -0.128 | -0.65 |
| H37Rv_KO_Rv1272 | -0.226 | -0.247 |
| H37Rv_KO_SugABC | -1.711 | -0.695 |
| H37Rv_KO_MbtN | 0.074 | -0.214 |
| Trans05 | 0.668 | 0.042 |
| macrophage_unactivated | 0.814 | -0.107 |
| IL1 | -0.033 | 0.065 |
| Rapamycin | 0.62 | -0.212 |
| Tcell | 0.658 | 0.0 |
| GMCSF | -0.298 | 0.256 |
| IFNab | -0.033 | -0.172 |
| IFNg | 0.385 | 0.147 |
| IFNg_GMCSF1 | 1.348 | 0.035 |
| Rv1432_day32 | 0.166 | -0.037 |
| Rv1565c_day32 | -0.978 | 0.648 |
| secA2_input | 0.711 | 0.041 |
| delta_Rv3594 | -0.828 | -0.659 |
| delta_Rv3717 | -0.106 | -0.69 |
| delta_Rv3811 | -1.463 | -0.622 |
| delta_Rv0954 | -0.388 | -0.492 |
| PonA1 | -0.139 | 0.347 |
| EccD1_KO | 1.677 | 1.082 |
| EspI_KO | 1.095 | 0.034 |
| PE35_KO | 1.175 | 0.411 |
| PPE68_KO | 1.433 | -0.285 |
| glycerol2 | 0.398 | 0.894 |
| lignocerate | 0.558 | 1.086 |
| oleate | 0.121 | 0.201 |
| phosphatidylcholine | 0.604 | 0.826 |
| acetate | 0.02 | 0.429 |
| glucAc | 0.304 | 1.187 |
| Rv0950ko | -0.103 | 0.392 |
| Rv1096ko | 0.229 | -0.151 |
| Rv3684ko | 0.0 | -0.377 |
| delta_otsA_trehalose | -1.154 | -1.454 |