Top 10 genes with highest correlation to Rv3074/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1939/- | (cc=0.4927) | info on Rv1939/- |
| Rv3195/- | (cc=0.4689) | info on Rv3195/- |
| Rv2980/- | (cc=0.4557) | info on Rv2980/- |
| Rv0869c/moaA2 | (cc=0.4552) | info on Rv0869c/moaA2 |
| Rv3055/- | (cc=0.4466) | info on Rv3055/- |
| Rv2504c/scoA | (cc=0.4309) | info on Rv2504c/scoA |
| Rv3057c/- | (cc=0.43) | info on Rv3057c/- |
| Rv2998/- | (cc=0.4283) | info on Rv2998/- |
| Rv2251/- | (cc=0.4239) | info on Rv2251/- |
| Rv0690c/- | (cc=0.4227) | info on Rv0690c/- |
Correlation of Rv3074/- with Rv1939/-
Normalized LFCs for Rv3074/-:
(description and provenance of datasets)
| Rv3074/- | Rv1939/- | |
| Fe_supp_jason_reseq | -0.12 | -1.937 |
| low_pH_jason_reseq | 0.293 | 1.032 |
| NO_jason_reseq | -0.252 | 0.383 |
| B6_jason_reseq | -0.118 | -0.487 |
| MHCII_jason_reseq | -0.113 | -0.671 |
| Isoniazid02 | 0.332 | 1.014 |
| Rifampicin4 | 1.438 | 1.097 |
| Ethambutol3 | 0.348 | 0.223 |
| Meropenem3 | 0.313 | 1.052 |
| Vancomycin16 | 0.844 | -0.106 |
| Rv2680_day32 | 0.361 | 1.99 |
| H37Rv_KO_MarP | 0.144 | -0.107 |
| hypoxia_3wks | 0.494 | -0.459 |
| hypoxia_6wks | 0.871 | -1.244 |
| glycerol | -0.704 | -1.309 |
| cholesterol | 0.01 | -0.218 |
| AJ | 0.276 | 0.099 |
| Bibs02 | -0.657 | -2.906 |
| Bibs02c | -0.483 | -1.161 |
| BL6 | -0.361 | -3.238 |
| BL6a | -0.121 | -1.35 |
| BXD01 | 0.543 | -0.888 |
| BXD010 | -0.25 | -3.071 |
| BXD011 | -0.098 | -1.418 |
| BXD03 | -0.5 | -2.669 |
| BXD04 | -0.833 | -1.917 |
| BXD05 | 0.195 | -0.85 |
| BXD06 | -0.168 | -2.122 |
| BXD07 | -0.162 | -2.442 |
| BXD08 | 0.219 | -3.189 |
| BXD09 | -0.447 | -2.695 |
| CAST | -0.234 | 0.232 |
| CCcont | 0.117 | -3.716 |
| DS01 | -1.109 | -1.571 |
| DS02 | 0.047 | -0.739 |
| DS04 | -0.396 | -1.528 |
| DS0c | 0.383 | 0.643 |
| GP01 | 0.036 | -2.556 |
| GP02 | -0.884 | -2.154 |
| GP0c | -0.413 | -2.727 |
| NOD | -0.583 | -1.115 |
| NZO | -0.302 | 0.468 |
| PWK | 0.168 | 0.86 |
| H37Rv_KO_CtpC | 0.149 | -0.901 |
| H37Rv_KO_CtpD | -0.128 | -0.298 |
| H37Rv_KO_Rv1272 | -0.226 | -0.68 |
| H37Rv_KO_SugABC | -1.711 | -0.17 |
| H37Rv_KO_MbtN | 0.074 | 0.312 |
| Trans05 | 0.668 | 0.183 |
| macrophage_unactivated | 0.814 | 2.781 |
| IL1 | -0.033 | 0.0 |
| Rapamycin | 0.62 | -0.491 |
| Tcell | 0.658 | 3.617 |
| GMCSF | -0.298 | 0.729 |
| IFNab | -0.033 | -1.333 |
| IFNg | 0.385 | 0.567 |
| IFNg_GMCSF1 | 1.348 | 1.423 |
| Rv1432_day32 | 0.166 | 0.087 |
| Rv1565c_day32 | -0.978 | 1.309 |
| secA2_input | 0.711 | 2.408 |
| delta_Rv3594 | -0.828 | -2.533 |
| delta_Rv3717 | -0.106 | -0.881 |
| delta_Rv3811 | -1.463 | -0.912 |
| delta_Rv0954 | -0.388 | -1.828 |
| PonA1 | -0.139 | -2.246 |
| EccD1_KO | 1.677 | 2.973 |
| EspI_KO | 1.095 | 3.254 |
| PE35_KO | 1.175 | 1.881 |
| PPE68_KO | 1.433 | 3.257 |
| glycerol2 | 0.398 | -3.357 |
| lignocerate | 0.558 | -2.175 |
| oleate | 0.121 | -1.26 |
| phosphatidylcholine | 0.604 | -1.613 |
| acetate | 0.02 | -1.81 |
| glucAc | 0.304 | -3.434 |
| Rv0950ko | -0.103 | -0.823 |
| Rv1096ko | 0.229 | 1.288 |
| Rv3684ko | 0.0 | -1.877 |
| delta_otsA_trehalose | -1.154 | 0.066 |