TnSeqCorr

Top 10 genes with highest correlation to Rv3020c/esxS:

update plotcorrelationlink to info on gene
Rv3398c/idsA1 (cc=0.5563) info on Rv3398c/idsA1
Rv1984c/cfp21 (cc=0.5411) info on Rv1984c/cfp21
Rv1831/- (cc=0.5351) info on Rv1831/-
Rv1918c/PPE35 (cc=0.5215) info on Rv1918c/PPE35
Rv0647c/- (cc=0.5091) info on Rv0647c/-
Rv1521/fadD25 (cc=0.4911) info on Rv1521/fadD25
Rv1787/PPE25 (cc=0.4902) info on Rv1787/PPE25
Rv1949c/- (cc=0.4875) info on Rv1949c/-
Rv1482c/- (cc=0.4861) info on Rv1482c/-
Rv2339/mmpL9 (cc=0.4809) info on Rv2339/mmpL9

Correlation of Rv3020c/esxS with Rv3398c/idsA1

Normalized LFCs for Rv3020c/esxS:
(description and provenance of datasets)
Rv3020c/esxSRv3398c/idsA1
Fe_supp_jason_reseq

-0.174

-0.677

low_pH_jason_reseq

-0.077

0.694

NO_jason_reseq

-1.436

-0.11

B6_jason_reseq

-2.341

-2.06

MHCII_jason_reseq

-1.579

-2.841

Isoniazid02

-0.776

2.012

Rifampicin4

0.222

-0.403

Ethambutol3

-0.471

1.411

Meropenem3

0.086

-0.255

Vancomycin16

-0.172

0.358

Rv2680_day32

-0.756

0.041

H37Rv_KO_MarP

-0.494

0.165

hypoxia_3wks

0.997

0.359

hypoxia_6wks

1.43

0.748

glycerol

-2.85

-1.229

cholesterol

-0.657

-0.24

AJ

-1.052

-1.287

Bibs02

-2.448

-0.303

Bibs02c

-0.212

-0.762

BL6

-1.966

-0.208

BL6a

0.865

1.373

BXD01

1.258

1.355

BXD010

1.112

1.403

BXD011

1.23

1.139

BXD03

-0.226

1.948

BXD04

0.73

1.608

BXD05

0.239

1.701

BXD06

0.531

1.245

BXD07

0.177

1.105

BXD08

1.232

1.062

BXD09

0.718

1.379

CAST

0.332

-0.302

CCcont

-1.026

0.173

DS01

-0.19

0.339

DS02

0.457

0.876

DS04

1.348

0.698

DS0c

-0.984

-1.092

GP01

0.297

-0.164

GP02

0.286

0.722

GP0c

-0.132

-1.112

NOD

0.609

-0.07

NZO

0.22

-0.062

PWK

0.978

0.117

H37Rv_KO_CtpC

0.71

2.762

H37Rv_KO_CtpD

0.954

1.542

H37Rv_KO_Rv1272

1.691

2.022

H37Rv_KO_SugABC

-0.883

2.161

H37Rv_KO_MbtN

2.472

0.0

Trans05

1.533

0.986

macrophage_unactivated

1.001

1.787

IL1

0.377

1.317

Rapamycin

-0.503

1.406

Tcell

0.482

1.16

GMCSF

1.022

1.79

IFNab

0.067

1.427

IFNg

1.296

1.224

IFNg_GMCSF1

1.323

1.694

Rv1432_day32

1.443

0.85

Rv1565c_day32

0.0

1.591

secA2_input

1.094

0.0

delta_Rv3594

-1.104

-0.436

delta_Rv3717

-0.617

-1.081

delta_Rv3811

-0.491

-0.998

delta_Rv0954

-2.474

-0.585

PonA1

-1.08

0.275

EccD1_KO

0.855

-0.678

EspI_KO

-0.773

0.61

PE35_KO

0.665

0.624

PPE68_KO

0.061

1.328

glycerol2

-1.344

-1.327

lignocerate

-1.34

-1.122

oleate

-0.02

0.22

phosphatidylcholine

-0.734

-0.896

acetate

-1.829

-1.287

glucAc

-1.868

-1.381

Rv0950ko

0.983

-0.06

Rv1096ko

-1.592

1.04

Rv3684ko

-0.976

-0.4

delta_otsA_trehalose

-1.151

0.58