Top 10 genes with highest correlation to Rv2998/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1508A/- | (cc=0.5325) | info on Rv1508A/- |
| Rv2492/- | (cc=0.5168) | info on Rv2492/- |
| Rv0691c/- | (cc=0.5138) | info on Rv0691c/- |
| Rv3138/pflA | (cc=0.5123) | info on Rv3138/pflA |
| Rv0567/- | (cc=0.4873) | info on Rv0567/- |
| Rv2310/- | (cc=0.4857) | info on Rv2310/- |
| Rv1269c/- | (cc=0.4854) | info on Rv1269c/- |
| Rv2880c/- | (cc=0.4774) | info on Rv2880c/- |
| Rv0934/pstS1 | (cc=0.4497) | info on Rv0934/pstS1 |
| Rv0557/mgtA | (cc=0.4462) | info on Rv0557/mgtA |
Correlation of Rv2998/- with Rv1508A/-
Normalized LFCs for Rv2998/-:
(description and provenance of datasets)
| Rv2998/- | Rv1508A/- | |
| Fe_supp_jason_reseq | 0.0 | 0.608 |
| low_pH_jason_reseq | -1.074 | 0.279 |
| NO_jason_reseq | 0.378 | 0.116 |
| B6_jason_reseq | -0.74 | -0.172 |
| MHCII_jason_reseq | 0.621 | -0.921 |
| Isoniazid02 | -0.723 | -0.662 |
| Rifampicin4 | 0.647 | -0.36 |
| Ethambutol3 | -0.373 | 1.415 |
| Meropenem3 | -1.329 | -0.252 |
| Vancomycin16 | -0.568 | -0.48 |
| Rv2680_day32 | -2.766 | -0.352 |
| H37Rv_KO_MarP | 0.401 | 0.509 |
| hypoxia_3wks | 0.044 | -0.921 |
| hypoxia_6wks | 0.67 | 0.489 |
| glycerol | -0.357 | -0.974 |
| cholesterol | -0.07 | -0.19 |
| AJ | -0.015 | 0.36 |
| Bibs02 | -0.558 | -1.407 |
| Bibs02c | 0.571 | 0.243 |
| BL6 | 0.368 | 0.497 |
| BL6a | 0.927 | -0.07 |
| BXD01 | 0.66 | 0.131 |
| BXD010 | -0.018 | 0.31 |
| BXD011 | 0.008 | -0.3 |
| BXD03 | 0.289 | 0.418 |
| BXD04 | 0.389 | 0.011 |
| BXD05 | 1.214 | -0.331 |
| BXD06 | 0.642 | 0.046 |
| BXD07 | 0.769 | -0.223 |
| BXD08 | 0.684 | -0.122 |
| BXD09 | 0.576 | 0.185 |
| CAST | 0.137 | 0.475 |
| CCcont | -0.389 | -0.21 |
| DS01 | -0.536 | 0.0 |
| DS02 | -0.438 | -0.584 |
| DS04 | -0.208 | -0.178 |
| DS0c | 1.571 | -0.097 |
| GP01 | 1.334 | 0.68 |
| GP02 | -0.538 | 0.084 |
| GP0c | -0.23 | 0.182 |
| NOD | -0.174 | -0.02 |
| NZO | -0.663 | -0.751 |
| PWK | 0.993 | -0.217 |
| H37Rv_KO_CtpC | 0.613 | 0.201 |
| H37Rv_KO_CtpD | 1.171 | 1.846 |
| H37Rv_KO_Rv1272 | 0.714 | 1.664 |
| H37Rv_KO_SugABC | -1.841 | -1.846 |
| H37Rv_KO_MbtN | -1.256 | -0.266 |
| Trans05 | 0.127 | 0.788 |
| macrophage_unactivated | 0.877 | 0.385 |
| IL1 | 0.068 | -0.742 |
| Rapamycin | 0.071 | 0.117 |
| Tcell | 0.345 | 0.283 |
| GMCSF | 1.085 | -0.069 |
| IFNab | 0.121 | -0.363 |
| IFNg | 0.535 | -0.548 |
| IFNg_GMCSF1 | 0.214 | -0.204 |
| Rv1432_day32 | 1.7 | 0.811 |
| Rv1565c_day32 | -0.381 | -0.55 |
| secA2_input | -0.304 | -0.612 |
| delta_Rv3594 | -2.168 | -1.848 |
| delta_Rv3717 | -1.986 | -1.063 |
| delta_Rv3811 | -1.698 | -0.842 |
| delta_Rv0954 | -1.265 | -1.008 |
| PonA1 | -2.401 | -0.374 |
| EccD1_KO | 1.214 | 0.118 |
| EspI_KO | 0.633 | -0.519 |
| PE35_KO | 1.896 | 1.038 |
| PPE68_KO | 1.609 | 1.107 |
| glycerol2 | 0.371 | -0.113 |
| lignocerate | -0.186 | 0.138 |
| oleate | 0.74 | -0.155 |
| phosphatidylcholine | 0.577 | 0.322 |
| acetate | -0.977 | 0.086 |
| glucAc | -1.121 | 0.166 |
| Rv0950ko | 0.757 | -0.163 |
| Rv1096ko | 1.707 | -1.019 |
| Rv3684ko | -0.242 | -0.684 |
| delta_otsA_trehalose | -2.389 | -2.369 |