Top 10 genes with highest correlation to Rv2970A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0478/deoC | (cc=0.5969) | info on Rv0478/deoC |
| Rv0262c/aac | (cc=0.5404) | info on Rv0262c/aac |
| Rv2456c/- | (cc=0.5304) | info on Rv2456c/- |
| Rv0055/rpsR1 | (cc=0.5266) | info on Rv0055/rpsR1 |
| Rv1561/vapC11 | (cc=0.5237) | info on Rv1561/vapC11 |
| Rv1870c/- | (cc=0.5228) | info on Rv1870c/- |
| Rv1207/folP2 | (cc=0.5221) | info on Rv1207/folP2 |
| Rv3174/- | (cc=0.5206) | info on Rv3174/- |
| Rv0051/- | (cc=0.5119) | info on Rv0051/- |
| Rv2330c/lppP | (cc=0.4927) | info on Rv2330c/lppP |
Correlation of Rv2970A/- with Rv0478/deoC
Normalized LFCs for Rv2970A/-:
(description and provenance of datasets)
| Rv2970A/- | Rv0478/deoC | |
| Fe_supp_jason_reseq | 1.023 | 0.15 |
| low_pH_jason_reseq | 0.835 | -0.731 |
| NO_jason_reseq | -0.572 | -2.142 |
| B6_jason_reseq | 0.598 | 1.559 |
| MHCII_jason_reseq | -1.115 | -0.517 |
| Isoniazid02 | 2.002 | 3.194 |
| Rifampicin4 | 0.409 | 0.964 |
| Ethambutol3 | 5.696 | 3.822 |
| Meropenem3 | 0.444 | -0.371 |
| Vancomycin16 | 0.846 | -0.669 |
| Rv2680_day32 | 0.715 | 0.062 |
| H37Rv_KO_MarP | 0.968 | 0.535 |
| hypoxia_3wks | -0.778 | -0.447 |
| hypoxia_6wks | 0.766 | 0.246 |
| glycerol | -0.389 | 0.641 |
| cholesterol | 0.184 | 0.423 |
| AJ | -1.704 | -0.75 |
| Bibs02 | -1.269 | -0.935 |
| Bibs02c | 0.303 | -0.629 |
| BL6 | 3.312 | 1.041 |
| BL6a | 2.184 | 0.99 |
| BXD01 | 2.485 | 1.893 |
| BXD010 | 1.936 | 1.964 |
| BXD011 | 2.424 | 1.974 |
| BXD03 | 2.181 | 1.121 |
| BXD04 | 1.689 | 1.2 |
| BXD05 | 3.209 | 1.063 |
| BXD06 | 2.483 | 1.782 |
| BXD07 | 2.987 | 1.264 |
| BXD08 | 1.885 | 2.159 |
| BXD09 | 2.328 | 1.298 |
| CAST | 0.699 | -1.555 |
| CCcont | 2.221 | 0.807 |
| DS01 | 0.527 | 0.116 |
| DS02 | -0.866 | -1.468 |
| DS04 | -1.196 | -0.888 |
| DS0c | -0.735 | 1.106 |
| GP01 | -1.621 | 0.041 |
| GP02 | -1.116 | 0.398 |
| GP0c | -0.156 | 0.958 |
| NOD | 1.051 | -2.278 |
| NZO | -0.62 | -0.812 |
| PWK | 0.118 | -2.269 |
| H37Rv_KO_CtpC | 0.293 | 0.76 |
| H37Rv_KO_CtpD | 0.051 | 1.284 |
| H37Rv_KO_Rv1272 | 0.802 | 0.047 |
| H37Rv_KO_SugABC | -0.749 | -2.057 |
| H37Rv_KO_MbtN | 1.533 | -1.459 |
| Trans05 | 0.0 | -0.947 |
| macrophage_unactivated | 1.414 | 0.3 |
| IL1 | 1.706 | -0.836 |
| Rapamycin | 0.482 | 0.292 |
| Tcell | 0.577 | -0.567 |
| GMCSF | 0.304 | 0.219 |
| IFNab | 1.684 | 0.81 |
| IFNg | 0.318 | 1.395 |
| IFNg_GMCSF1 | 0.657 | 0.123 |
| Rv1432_day32 | 0.0 | 0.675 |
| Rv1565c_day32 | -0.599 | -0.191 |
| secA2_input | 2.779 | 1.068 |
| delta_Rv3594 | -0.672 | -0.505 |
| delta_Rv3717 | -0.248 | -0.281 |
| delta_Rv3811 | -0.822 | -2.55 |
| delta_Rv0954 | -2.417 | -1.313 |
| PonA1 | 0.0 | -3.114 |
| EccD1_KO | 0.099 | -1.059 |
| EspI_KO | -0.89 | -2.647 |
| PE35_KO | 0.058 | -0.758 |
| PPE68_KO | -0.032 | -1.533 |
| glycerol2 | 0.835 | -0.796 |
| lignocerate | 2.012 | 0.062 |
| oleate | 0.434 | -0.532 |
| phosphatidylcholine | 1.303 | -0.724 |
| acetate | 1.652 | 0.697 |
| glucAc | 1.092 | 0.321 |
| Rv0950ko | 0.823 | 0.353 |
| Rv1096ko | -0.106 | 2.147 |
| Rv3684ko | -1.323 | 0.213 |
| delta_otsA_trehalose | -1.271 | -1.884 |