TnSeqCorr

Top 10 genes with highest correlation to Rv2957/-:

update plotcorrelationlink to info on gene
Rv3125c/PPE49 (cc=0.6276) info on Rv3125c/PPE49
Rv1498c/- (cc=0.5722) info on Rv1498c/-
Rv2775/- (cc=0.5567) info on Rv2775/-
Rv1506c/- (cc=0.5511) info on Rv1506c/-
Rv1503c/- (cc=0.551) info on Rv1503c/-
Rv2777c/- (cc=0.5378) info on Rv2777c/-
Rv3142c/- (cc=0.5116) info on Rv3142c/-
Rv2807/- (cc=0.5105) info on Rv2807/-
Rv2452c/- (cc=0.5068) info on Rv2452c/-
Rv2428/ahpC (cc=0.5063) info on Rv2428/ahpC

Correlation of Rv2957/- with Rv1506c/-

Normalized LFCs for Rv2957/-:
(description and provenance of datasets)
Rv2957/-Rv1506c/-
Fe_supp_jason_reseq

0.507

1.14

low_pH_jason_reseq

-0.46

-0.124

NO_jason_reseq

-0.018

-0.845

B6_jason_reseq

0.052

0.451

MHCII_jason_reseq

0.319

0.886

Isoniazid02

-0.784

-1.622

Rifampicin4

0.417

0.46

Ethambutol3

0.316

-1.024

Meropenem3

-0.769

-1.301

Vancomycin16

-0.17

-0.639

Rv2680_day32

0.675

1.024

H37Rv_KO_MarP

0.492

0.347

hypoxia_3wks

-0.12

0.203

hypoxia_6wks

-0.236

-0.727

glycerol

-0.018

0.083

cholesterol

-0.17

-0.3

AJ

0.171

0.141

Bibs02

-0.04

-1.109

Bibs02c

0.399

1.285

BL6

0.256

0.614

BL6a

0.131

0.696

BXD01

0.434

1.29

BXD010

0.519

1.138

BXD011

0.322

0.522

BXD03

0.536

0.056

BXD04

0.994

0.236

BXD05

0.11

-0.246

BXD06

0.465

0.91

BXD07

0.422

0.311

BXD08

0.268

0.564

BXD09

0.49

0.596

CAST

0.347

-0.364

CCcont

0.191

-0.273

DS01

-0.123

-0.101

DS02

0.221

-0.684

DS04

-0.228

-0.083

DS0c

0.358

-0.239

GP01

0.782

0.795

GP02

0.576

-0.444

GP0c

0.039

-0.337

NOD

0.692

-0.524

NZO

-0.402

-0.517

PWK

0.395

0.473

H37Rv_KO_CtpC

0.936

0.392

H37Rv_KO_CtpD

0.909

1.137

H37Rv_KO_Rv1272

1.143

0.946

H37Rv_KO_SugABC

0.842

1.051

H37Rv_KO_MbtN

0.76

1.546

Trans05

1.468

1.207

macrophage_unactivated

0.615

0.505

IL1

-0.329

-0.086

Rapamycin

-0.307

-0.555

Tcell

-0.476

1.14

GMCSF

-0.869

-1.222

IFNab

-0.115

-0.644

IFNg

0.139

-0.748

IFNg_GMCSF1

-0.478

-0.569

Rv1432_day32

0.01

0.379

Rv1565c_day32

0.0

-2.289

secA2_input

0.114

-0.036

delta_Rv3594

0.061

-0.603

delta_Rv3717

-0.609

0.0

delta_Rv3811

0.0

-0.132

delta_Rv0954

-0.561

-1.009

PonA1

-0.38

-1.13

EccD1_KO

0.51

0.171

EspI_KO

0.853

1.437

PE35_KO

1.103

0.893

PPE68_KO

0.745

0.246

glycerol2

0.303

-1.213

lignocerate

0.247

-1.841

oleate

0.251

-0.693

phosphatidylcholine

0.356

-0.964

acetate

-0.318

-2.806

glucAc

-0.209

-1.457

Rv0950ko

0.666

-0.106

Rv1096ko

-0.344

-0.932

Rv3684ko

0.131

-0.544

delta_otsA_trehalose

-0.462

1.496