TnSeqCorr

Top 10 genes with highest correlation to Rv2841c/nusA:

update plotcorrelationlink to info on gene
Rv1160/mutT2 (cc=0.6612) info on Rv1160/mutT2
Rv1734c/- (cc=0.6273) info on Rv1734c/-
Rv3344c/PE_PGRS49 (cc=0.6237) info on Rv3344c/PE_PGRS49
Rv3697c/vapC48 (cc=0.6194) info on Rv3697c/vapC48
Rv0984/moaB2 (cc=0.6063) info on Rv0984/moaB2
Rv1610/- (cc=0.6062) info on Rv1610/-
Rv3749c/- (cc=0.6054) info on Rv3749c/-
Rv2571c/- (cc=0.5873) info on Rv2571c/-
Rv0297/PE_PGRS5 (cc=0.5872) info on Rv0297/PE_PGRS5
Rv2287/yjcE (cc=0.5846) info on Rv2287/yjcE

Correlation of Rv2841c/nusA with Rv3749c/-

Normalized LFCs for Rv2841c/nusA:
(description and provenance of datasets)
Rv2841c/nusARv3749c/-
Fe_supp_jason_reseq

0.0

0.253

low_pH_jason_reseq

0.0

-0.602

NO_jason_reseq

0.0

0.026

B6_jason_reseq

0.0

0.466

MHCII_jason_reseq

0.0

0.688

Isoniazid02

-0.201

-0.227

Rifampicin4

0.0

0.062

Ethambutol3

0.423

0.136

Meropenem3

-0.165

-0.904

Vancomycin16

0.0

-0.464

Rv2680_day32

0.0

-0.008

H37Rv_KO_MarP

0.0

0.429

hypoxia_3wks

0.0

-0.1

hypoxia_6wks

0.0

-0.098

glycerol

0.202

-2.336

cholesterol

0.509

-1.456

AJ

0.0

0.225

Bibs02

0.0

-0.535

Bibs02c

0.0

0.779

BL6

0.0

-0.411

BL6a

0.0

0.532

BXD01

0.0

-0.171

BXD010

0.0

0.558

BXD011

0.0

-0.294

BXD03

0.0

-0.054

BXD04

0.0

-0.348

BXD05

0.0

0.359

BXD06

0.0

-0.489

BXD07

0.0

-0.021

BXD08

0.0

-0.206

BXD09

0.0

-0.101

CAST

0.439

0.354

CCcont

0.0

-0.373

DS01

0.83

-0.101

DS02

0.0

-0.487

DS04

0.0

-0.521

DS0c

0.0

0.193

GP01

0.0

1.065

GP02

0.0

-0.271

GP0c

0.0

-0.257

NOD

0.225

0.716

NZO

0.0

0.077

PWK

0.0

0.175

H37Rv_KO_CtpC

0.571

-0.755

H37Rv_KO_CtpD

0.0

-0.643

H37Rv_KO_Rv1272

0.0

-0.229

H37Rv_KO_SugABC

0.0

-0.009

H37Rv_KO_MbtN

0.103

-1.433

Trans05

0.131

-0.542

macrophage_unactivated

-2.14

-1.386

IL1

-2.011

-5.09

Rapamycin

-2.081

-4.944

Tcell

-2.209

2.366

GMCSF

-1.79

-4.267

IFNab

-2.05

-4.734

IFNg

-1.812

-4.479

IFNg_GMCSF1

-2.13

-5.144

Rv1432_day32

-1.124

0.077

Rv1565c_day32

0.0

0.18

secA2_input

-0.216

-0.941

delta_Rv3594

0.742

-0.393

delta_Rv3717

0.736

-0.339

delta_Rv3811

1.261

-0.082

delta_Rv0954

0.178

0.141

PonA1

0.0

-0.029

EccD1_KO

-0.595

-0.428

EspI_KO

-0.799

-0.034

PE35_KO

-0.817

-0.604

PPE68_KO

-0.896

-0.877

glycerol2

0.0

0.901

lignocerate

0.0

0.793

oleate

0.0

0.906

phosphatidylcholine

0.0

1.018

acetate

0.0

0.318

glucAc

0.0

0.22

Rv0950ko

0.727

0.356

Rv1096ko

0.727

0.425

Rv3684ko

1.772

-0.016

delta_otsA_trehalose

0.133

1.092