TnSeqCorr

Top 10 genes with highest correlation to Rv2643/arsC:

update plotcorrelationlink to info on gene
Rv0333/- (cc=0.549) info on Rv0333/-
Rv3395A/- (cc=0.4905) info on Rv3395A/-
Rv0418/lpqL (cc=0.4466) info on Rv0418/lpqL
Rv1164/narI (cc=0.4447) info on Rv1164/narI
Rv0435c/- (cc=0.4424) info on Rv0435c/-
Rv2670c/- (cc=0.4376) info on Rv2670c/-
Rv0273c/- (cc=0.437) info on Rv0273c/-
Rv1935c/echA13 (cc=0.4269) info on Rv1935c/echA13
Rv3175/- (cc=0.4258) info on Rv3175/-
Rv0869c/moaA2 (cc=0.4164) info on Rv0869c/moaA2

Correlation of Rv2643/arsC with Rv0418/lpqL

Normalized LFCs for Rv2643/arsC:
(description and provenance of datasets)
Rv2643/arsCRv0418/lpqL
Fe_supp_jason_reseq

-0.459

-0.721

low_pH_jason_reseq

-0.025

-0.105

NO_jason_reseq

0.278

-0.459

B6_jason_reseq

0.176

-0.445

MHCII_jason_reseq

0.255

0.712

Isoniazid02

0.371

0.981

Rifampicin4

0.106

0.319

Ethambutol3

0.173

0.866

Meropenem3

2.282

3.701

Vancomycin16

0.305

0.459

Rv2680_day32

0.105

-1.64

H37Rv_KO_MarP

0.219

1.348

hypoxia_3wks

-0.171

-0.183

hypoxia_6wks

-0.313

-0.685

glycerol

-0.591

0.543

cholesterol

-0.029

0.284

AJ

0.103

-0.192

Bibs02

-0.162

1.069

Bibs02c

-0.327

-0.073

BL6

0.192

-0.216

BL6a

-0.165

-1.065

BXD01

0.0

-1.278

BXD010

0.439

-1.018

BXD011

-0.045

-0.71

BXD03

-0.377

-0.862

BXD04

0.432

-1.143

BXD05

0.642

-0.674

BXD06

0.078

-1.197

BXD07

0.021

-0.668

BXD08

0.0

-1.09

BXD09

0.19

-0.783

CAST

-0.255

-0.429

CCcont

-0.314

-0.361

DS01

-0.084

0.717

DS02

0.096

0.97

DS04

0.412

-0.136

DS0c

0.137

-0.493

GP01

0.324

-0.034

GP02

-0.184

-1.034

GP0c

-0.645

-0.604

NOD

0.467

0.026

NZO

0.126

-0.318

PWK

-0.02

-0.649

H37Rv_KO_CtpC

-0.18

-0.937

H37Rv_KO_CtpD

-0.228

1.28

H37Rv_KO_Rv1272

-0.133

0.25

H37Rv_KO_SugABC

0.388

0.258

H37Rv_KO_MbtN

-1.178

-1.244

Trans05

-0.145

-0.433

macrophage_unactivated

0.401

0.079

IL1

0.11

0.148

Rapamycin

0.178

0.847

Tcell

-0.222

-0.342

GMCSF

-0.327

-0.576

IFNab

0.0

0.296

IFNg

0.818

-0.139

IFNg_GMCSF1

0.506

0.157

Rv1432_day32

0.357

-0.645

Rv1565c_day32

-0.851

0.567

secA2_input

0.18

0.16

delta_Rv3594

-0.592

-1.94

delta_Rv3717

-0.741

-1.487

delta_Rv3811

-0.915

-1.975

delta_Rv0954

-0.258

-0.505

PonA1

1.005

-0.993

EccD1_KO

0.0

0.25

EspI_KO

0.194

0.054

PE35_KO

-0.088

0.222

PPE68_KO

-0.262

-0.458

glycerol2

-0.062

0.15

lignocerate

0.132

-0.069

oleate

0.254

-1.581

phosphatidylcholine

0.207

-0.531

acetate

-0.073

0.941

glucAc

-0.027

0.378

Rv0950ko

0.612

0.238

Rv1096ko

1.149

0.573

Rv3684ko

0.344

0.383

delta_otsA_trehalose

-0.771

-0.081