Top 10 genes with highest correlation to Rv2607/pdxH:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2219/- | (cc=0.5654) | info on Rv2219/- |
| Rv2237/- | (cc=0.543) | info on Rv2237/- |
| Rv1062/- | (cc=0.541) | info on Rv1062/- |
| Rv3208A/TB9.4 | (cc=0.5368) | info on Rv3208A/TB9.4 |
| Rv2307A/- | (cc=0.5355) | info on Rv2307A/- |
| Rv0042c/- | (cc=0.5271) | info on Rv0042c/- |
| Rv2008c/- | (cc=0.5189) | info on Rv2008c/- |
| Rv1987/- | (cc=0.516) | info on Rv1987/- |
| Rv2821c/- | (cc=0.4862) | info on Rv2821c/- |
| Rv2019/- | (cc=0.4818) | info on Rv2019/- |
Correlation of Rv2607/pdxH with Rv2307A/-
Normalized LFCs for Rv2607/pdxH:
(description and provenance of datasets)
| Rv2607/pdxH | Rv2307A/- | |
| Fe_supp_jason_reseq | 0.096 | 0.041 |
| low_pH_jason_reseq | -0.31 | 0.278 |
| NO_jason_reseq | -1.664 | -0.575 |
| B6_jason_reseq | -0.401 | 0.474 |
| MHCII_jason_reseq | 0.581 | 0.717 |
| Isoniazid02 | -1.104 | 0.351 |
| Rifampicin4 | 0.85 | -0.33 |
| Ethambutol3 | -0.803 | -0.302 |
| Meropenem3 | -0.355 | -0.042 |
| Vancomycin16 | -0.515 | 0.027 |
| Rv2680_day32 | -0.08 | 0.586 |
| H37Rv_KO_MarP | -0.172 | 0.721 |
| hypoxia_3wks | -0.674 | -0.873 |
| hypoxia_6wks | -0.447 | 0.422 |
| glycerol | 0.513 | -1.877 |
| cholesterol | 0.199 | -0.312 |
| AJ | 0.027 | 1.309 |
| Bibs02 | -0.585 | 0.929 |
| Bibs02c | -0.247 | 0.691 |
| BL6 | 0.401 | -0.173 |
| BL6a | -0.468 | 0.228 |
| BXD01 | -0.439 | -0.445 |
| BXD010 | 0.284 | 0.609 |
| BXD011 | -0.117 | -0.577 |
| BXD03 | 0.374 | -0.437 |
| BXD04 | -0.238 | -1.011 |
| BXD05 | 0.776 | 0.507 |
| BXD06 | 0.0 | -0.007 |
| BXD07 | -0.277 | 0.25 |
| BXD08 | -0.032 | -0.613 |
| BXD09 | -0.184 | 0.335 |
| CAST | 0.432 | 0.504 |
| CCcont | 0.512 | -0.229 |
| DS01 | 0.226 | -0.645 |
| DS02 | 0.05 | -0.03 |
| DS04 | -0.191 | -0.51 |
| DS0c | 0.449 | 0.416 |
| GP01 | 0.478 | -0.681 |
| GP02 | -0.287 | -1.973 |
| GP0c | -0.055 | -0.42 |
| NOD | 1.442 | 2.05 |
| NZO | 0.147 | 0.022 |
| PWK | 0.057 | 0.412 |
| H37Rv_KO_CtpC | -0.235 | 0.293 |
| H37Rv_KO_CtpD | 0.305 | 1.341 |
| H37Rv_KO_Rv1272 | -0.016 | 0.602 |
| H37Rv_KO_SugABC | 0.927 | 1.338 |
| H37Rv_KO_MbtN | -0.33 | 0.033 |
| Trans05 | 0.491 | 0.457 |
| macrophage_unactivated | 0.0 | -0.221 |
| IL1 | -0.596 | -1.267 |
| Rapamycin | -0.715 | -1.169 |
| Tcell | -1.323 | -0.792 |
| GMCSF | -0.837 | 0.034 |
| IFNab | -0.127 | -1.448 |
| IFNg | -0.756 | -0.273 |
| IFNg_GMCSF1 | -0.968 | -0.028 |
| Rv1432_day32 | 0.608 | 0.394 |
| Rv1565c_day32 | -0.131 | -0.34 |
| secA2_input | -0.294 | -0.656 |
| delta_Rv3594 | 1.64 | 1.221 |
| delta_Rv3717 | 1.367 | 0.97 |
| delta_Rv3811 | 1.48 | 1.703 |
| delta_Rv0954 | -0.039 | -0.277 |
| PonA1 | -1.272 | -0.038 |
| EccD1_KO | 0.194 | 0.326 |
| EspI_KO | -0.057 | 1.012 |
| PE35_KO | 0.796 | 0.785 |
| PPE68_KO | 0.23 | 0.848 |
| glycerol2 | 0.799 | 0.827 |
| lignocerate | 1.642 | 1.24 |
| oleate | -0.54 | 0.22 |
| phosphatidylcholine | 1.912 | 1.41 |
| acetate | 1.338 | 0.693 |
| glucAc | 1.263 | 0.836 |
| Rv0950ko | -0.431 | -0.247 |
| Rv1096ko | -0.709 | -2.413 |
| Rv3684ko | -0.675 | -0.609 |
| delta_otsA_trehalose | -0.459 | -1.804 |