Top 10 genes with highest correlation to Rv2607/pdxH:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2219/- | (cc=0.5654) | info on Rv2219/- |
| Rv2237/- | (cc=0.543) | info on Rv2237/- |
| Rv1062/- | (cc=0.541) | info on Rv1062/- |
| Rv3208A/TB9.4 | (cc=0.5368) | info on Rv3208A/TB9.4 |
| Rv2307A/- | (cc=0.5355) | info on Rv2307A/- |
| Rv0042c/- | (cc=0.5271) | info on Rv0042c/- |
| Rv2008c/- | (cc=0.5189) | info on Rv2008c/- |
| Rv1987/- | (cc=0.516) | info on Rv1987/- |
| Rv2821c/- | (cc=0.4862) | info on Rv2821c/- |
| Rv2019/- | (cc=0.4818) | info on Rv2019/- |
Correlation of Rv2607/pdxH with Rv2219/-
Normalized LFCs for Rv2607/pdxH:
(description and provenance of datasets)
| Rv2607/pdxH | Rv2219/- | |
| Fe_supp_jason_reseq | 0.096 | -0.137 |
| low_pH_jason_reseq | -0.31 | -1.282 |
| NO_jason_reseq | -1.664 | -0.228 |
| B6_jason_reseq | -0.401 | -0.097 |
| MHCII_jason_reseq | 0.581 | 0.229 |
| Isoniazid02 | -1.104 | 0.162 |
| Rifampicin4 | 0.85 | -0.682 |
| Ethambutol3 | -0.803 | -0.146 |
| Meropenem3 | -0.355 | -0.474 |
| Vancomycin16 | -0.515 | -0.669 |
| Rv2680_day32 | -0.08 | -1.75 |
| H37Rv_KO_MarP | -0.172 | 0.404 |
| hypoxia_3wks | -0.674 | -1.655 |
| hypoxia_6wks | -0.447 | -1.625 |
| glycerol | 0.513 | 0.313 |
| cholesterol | 0.199 | -0.676 |
| AJ | 0.027 | 0.096 |
| Bibs02 | -0.585 | 1.766 |
| Bibs02c | -0.247 | -1.605 |
| BL6 | 0.401 | 1.144 |
| BL6a | -0.468 | -1.058 |
| BXD01 | -0.439 | 0.534 |
| BXD010 | 0.284 | -0.684 |
| BXD011 | -0.117 | -0.977 |
| BXD03 | 0.374 | -0.388 |
| BXD04 | -0.238 | -0.845 |
| BXD05 | 0.776 | 0.347 |
| BXD06 | 0.0 | -0.623 |
| BXD07 | -0.277 | 0.883 |
| BXD08 | -0.032 | 0.467 |
| BXD09 | -0.184 | -0.122 |
| CAST | 0.432 | -0.307 |
| CCcont | 0.512 | 1.891 |
| DS01 | 0.226 | -0.678 |
| DS02 | 0.05 | 1.068 |
| DS04 | -0.191 | 0.953 |
| DS0c | 0.449 | -1.158 |
| GP01 | 0.478 | 0.986 |
| GP02 | -0.287 | -0.388 |
| GP0c | -0.055 | 0.248 |
| NOD | 1.442 | -0.905 |
| NZO | 0.147 | -1.065 |
| PWK | 0.057 | -1.189 |
| H37Rv_KO_CtpC | -0.235 | -0.558 |
| H37Rv_KO_CtpD | 0.305 | 2.726 |
| H37Rv_KO_Rv1272 | -0.016 | -0.753 |
| H37Rv_KO_SugABC | 0.927 | -0.677 |
| H37Rv_KO_MbtN | -0.33 | -0.296 |
| Trans05 | 0.491 | -1.121 |
| macrophage_unactivated | 0.0 | 0.234 |
| IL1 | -0.596 | -2.337 |
| Rapamycin | -0.715 | -2.418 |
| Tcell | -1.323 | 1.098 |
| GMCSF | -0.837 | -2.445 |
| IFNab | -0.127 | -2.382 |
| IFNg | -0.756 | -2.475 |
| IFNg_GMCSF1 | -0.968 | -2.476 |
| Rv1432_day32 | 0.608 | -0.18 |
| Rv1565c_day32 | -0.131 | -0.706 |
| secA2_input | -0.294 | 0.0 |
| delta_Rv3594 | 1.64 | 2.213 |
| delta_Rv3717 | 1.367 | 1.562 |
| delta_Rv3811 | 1.48 | 1.487 |
| delta_Rv0954 | -0.039 | 0.311 |
| PonA1 | -1.272 | -0.159 |
| EccD1_KO | 0.194 | 0.697 |
| EspI_KO | -0.057 | 0.605 |
| PE35_KO | 0.796 | 1.779 |
| PPE68_KO | 0.23 | 1.789 |
| glycerol2 | 0.799 | 3.845 |
| lignocerate | 1.642 | 3.444 |
| oleate | -0.54 | 0.0 |
| phosphatidylcholine | 1.912 | 3.37 |
| acetate | 1.338 | 3.661 |
| glucAc | 1.263 | 3.26 |
| Rv0950ko | -0.431 | -2.433 |
| Rv1096ko | -0.709 | -2.021 |
| Rv3684ko | -0.675 | -0.573 |
| delta_otsA_trehalose | -0.459 | 0.321 |