Top 10 genes with highest correlation to Rv2584c/apt:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1059/- | (cc=0.6684) | info on Rv1059/- |
| Rv3150/nuoF | (cc=0.6665) | info on Rv3150/nuoF |
| Rv2430c/PPE41 | (cc=0.6346) | info on Rv2430c/PPE41 |
| Rv2569c/- | (cc=0.6256) | info on Rv2569c/- |
| Rv3864/espE | (cc=0.6219) | info on Rv3864/espE |
| Rv3152/nuoH | (cc=0.6182) | info on Rv3152/nuoH |
| Rv0059/- | (cc=0.6153) | info on Rv0059/- |
| Rv0260c/- | (cc=0.6146) | info on Rv0260c/- |
| Rv0502/- | (cc=0.6133) | info on Rv0502/- |
| Rv3153/nuoI | (cc=0.6126) | info on Rv3153/nuoI |
Correlation of Rv2584c/apt with Rv2430c/PPE41
Normalized LFCs for Rv2584c/apt:
(description and provenance of datasets)
| Rv2584c/apt | Rv2430c/PPE41 | |
| Fe_supp_jason_reseq | -0.227 | -0.259 |
| low_pH_jason_reseq | 0.565 | -0.617 |
| NO_jason_reseq | 0.404 | -0.326 |
| B6_jason_reseq | -0.929 | -0.565 |
| MHCII_jason_reseq | -1.215 | -1.222 |
| Isoniazid02 | -0.808 | -0.362 |
| Rifampicin4 | -0.146 | -0.379 |
| Ethambutol3 | -0.59 | -0.539 |
| Meropenem3 | -0.443 | 0.604 |
| Vancomycin16 | -0.268 | -0.541 |
| Rv2680_day32 | 0.892 | -0.546 |
| H37Rv_KO_MarP | -0.556 | 0.78 |
| hypoxia_3wks | 0.738 | -0.016 |
| hypoxia_6wks | 1.046 | -0.558 |
| glycerol | 0.758 | -1.482 |
| cholesterol | -0.069 | -0.355 |
| AJ | 0.81 | 1.329 |
| Bibs02 | 1.106 | 0.293 |
| Bibs02c | 0.932 | -0.441 |
| BL6 | 0.958 | 2.014 |
| BL6a | 1.499 | 1.624 |
| BXD01 | 0.868 | 1.73 |
| BXD010 | 1.16 | 2.268 |
| BXD011 | 0.701 | 2.003 |
| BXD03 | 1.101 | 2.085 |
| BXD04 | 1.281 | 2.116 |
| BXD05 | 1.845 | 2.269 |
| BXD06 | 1.349 | 1.836 |
| BXD07 | 1.389 | 1.829 |
| BXD08 | 1.048 | 1.59 |
| BXD09 | 1.278 | 1.891 |
| CAST | 0.576 | 1.024 |
| CCcont | 1.444 | 1.659 |
| DS01 | 0.274 | 1.092 |
| DS02 | 0.12 | 0.558 |
| DS04 | -0.471 | 0.769 |
| DS0c | 0.511 | 0.509 |
| GP01 | 0.774 | 0.134 |
| GP02 | 0.966 | 2.462 |
| GP0c | 1.337 | 0.343 |
| NOD | -0.042 | 1.447 |
| NZO | 0.407 | 0.483 |
| PWK | 0.658 | 0.872 |
| H37Rv_KO_CtpC | 0.281 | 0.914 |
| H37Rv_KO_CtpD | 1.793 | 1.252 |
| H37Rv_KO_Rv1272 | 1.014 | 1.399 |
| H37Rv_KO_SugABC | 1.26 | 1.91 |
| H37Rv_KO_MbtN | 0.707 | 1.129 |
| Trans05 | 1.018 | 2.226 |
| macrophage_unactivated | 0.619 | 1.076 |
| IL1 | 0.697 | 0.125 |
| Rapamycin | 0.893 | 0.19 |
| Tcell | 0.228 | 0.094 |
| GMCSF | 2.017 | 0.636 |
| IFNab | 0.931 | 0.308 |
| IFNg | -0.013 | 0.537 |
| IFNg_GMCSF1 | 0.264 | 0.688 |
| Rv1432_day32 | 0.374 | -0.428 |
| Rv1565c_day32 | 0.041 | 0.782 |
| secA2_input | -1.75 | -0.891 |
| delta_Rv3594 | 0.347 | -0.571 |
| delta_Rv3717 | -0.422 | -1.178 |
| delta_Rv3811 | -0.207 | -0.265 |
| delta_Rv0954 | -0.433 | -1.172 |
| PonA1 | -0.406 | -0.066 |
| EccD1_KO | -0.977 | -0.625 |
| EspI_KO | -0.436 | -0.331 |
| PE35_KO | -0.688 | -0.726 |
| PPE68_KO | -0.611 | -0.701 |
| glycerol2 | 0.378 | -0.084 |
| lignocerate | 0.226 | -0.073 |
| oleate | 0.55 | 0.234 |
| phosphatidylcholine | 0.378 | 0.041 |
| acetate | 0.484 | 0.017 |
| glucAc | -0.133 | -0.627 |
| Rv0950ko | -0.703 | -0.136 |
| Rv1096ko | -0.401 | -0.22 |
| Rv3684ko | -1.117 | -0.508 |
| delta_otsA_trehalose | -0.167 | 1.428 |