Top 10 genes with highest correlation to Rv2544/lppB:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1987/- | (cc=0.7003) | info on Rv1987/- |
| Rv1471/trxB1 | (cc=0.6987) | info on Rv1471/trxB1 |
| Rv3528c/- | (cc=0.6054) | info on Rv3528c/- |
| Rv3232c/ppk2 | (cc=0.5719) | info on Rv3232c/ppk2 |
| Rv1499/- | (cc=0.5647) | info on Rv1499/- |
| Rv0997/- | (cc=0.5621) | info on Rv0997/- |
| Rv1896c/- | (cc=0.5584) | info on Rv1896c/- |
| Rv3148/nuoD | (cc=0.5548) | info on Rv3148/nuoD |
| Rv1502/- | (cc=0.5534) | info on Rv1502/- |
| Rv1548c/PPE21 | (cc=0.5495) | info on Rv1548c/PPE21 |
Correlation of Rv2544/lppB with Rv1502/-
Normalized LFCs for Rv2544/lppB:
(description and provenance of datasets)
| Rv2544/lppB | Rv1502/- | |
| Fe_supp_jason_reseq | 1.127 | 1.364 |
| low_pH_jason_reseq | -1.017 | -0.403 |
| NO_jason_reseq | 0.173 | 0.457 |
| B6_jason_reseq | 0.024 | -0.589 |
| MHCII_jason_reseq | -1.788 | -0.627 |
| Isoniazid02 | 0.0 | 0.78 |
| Rifampicin4 | -0.883 | -0.065 |
| Ethambutol3 | -0.353 | 0.527 |
| Meropenem3 | -0.391 | -0.214 |
| Vancomycin16 | 0.799 | -0.334 |
| Rv2680_day32 | 0.305 | -0.632 |
| H37Rv_KO_MarP | -0.246 | -0.825 |
| hypoxia_3wks | -0.813 | 0.14 |
| hypoxia_6wks | -0.115 | 1.247 |
| glycerol | 0.06 | -0.897 |
| cholesterol | -0.184 | -0.475 |
| AJ | -0.071 | -0.096 |
| Bibs02 | 0.437 | 0.0 |
| Bibs02c | 1.105 | 0.829 |
| BL6 | 1.373 | 1.837 |
| BL6a | 1.738 | 2.05 |
| BXD01 | 1.583 | 0.586 |
| BXD010 | 1.615 | 1.119 |
| BXD011 | 1.618 | 1.807 |
| BXD03 | 1.844 | 2.184 |
| BXD04 | 1.957 | 1.576 |
| BXD05 | 1.846 | 1.881 |
| BXD06 | 1.135 | 1.55 |
| BXD07 | 1.284 | 1.608 |
| BXD08 | 1.041 | 1.016 |
| BXD09 | 1.435 | 1.791 |
| CAST | -0.908 | -0.095 |
| CCcont | 1.744 | 1.478 |
| DS01 | 0.137 | -0.197 |
| DS02 | -0.276 | -0.279 |
| DS04 | 0.554 | -0.533 |
| DS0c | -0.275 | -0.379 |
| GP01 | -0.745 | -0.715 |
| GP02 | -0.444 | -0.672 |
| GP0c | -0.83 | -0.427 |
| NOD | -0.361 | -0.093 |
| NZO | -0.253 | -0.082 |
| PWK | 1.172 | 1.032 |
| H37Rv_KO_CtpC | 2.292 | 1.177 |
| H37Rv_KO_CtpD | 1.467 | 2.462 |
| H37Rv_KO_Rv1272 | 1.852 | 1.763 |
| H37Rv_KO_SugABC | 1.493 | 0.446 |
| H37Rv_KO_MbtN | 2.949 | 1.472 |
| Trans05 | 1.969 | 2.472 |
| macrophage_unactivated | 0.249 | 0.0 |
| IL1 | 0.178 | -0.107 |
| Rapamycin | 0.061 | 0.107 |
| Tcell | 0.56 | 0.055 |
| GMCSF | 0.309 | 0.182 |
| IFNab | 0.296 | 0.0 |
| IFNg | 0.828 | 0.804 |
| IFNg_GMCSF1 | 1.901 | 0.371 |
| Rv1432_day32 | 0.035 | -3.119 |
| Rv1565c_day32 | 1.311 | 0.599 |
| secA2_input | -0.606 | 0.063 |
| delta_Rv3594 | 1.201 | 0.6 |
| delta_Rv3717 | 0.055 | 0.619 |
| delta_Rv3811 | 0.86 | 0.825 |
| delta_Rv0954 | 0.727 | 0.636 |
| PonA1 | 0.075 | 0.53 |
| EccD1_KO | 0.059 | 0.365 |
| EspI_KO | 0.485 | 0.0 |
| PE35_KO | 0.855 | -0.537 |
| PPE68_KO | 0.841 | -0.093 |
| glycerol2 | 2.159 | -1.156 |
| lignocerate | 2.678 | -0.179 |
| oleate | -1.239 | -2.215 |
| phosphatidylcholine | 2.189 | -0.885 |
| acetate | 2.909 | -0.078 |
| glucAc | 2.554 | 0.159 |
| Rv0950ko | 0.121 | -0.522 |
| Rv1096ko | -0.712 | -1.592 |
| Rv3684ko | -0.517 | -0.481 |
| delta_otsA_trehalose | -0.318 | -0.525 |