Top 10 genes with highest correlation to Rv2541/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0959A/vapB9 | (cc=0.4443) | info on Rv0959A/vapB9 |
| Rv2881c/cdsA | (cc=0.4273) | info on Rv2881c/cdsA |
| Rv2222c/glnA2 | (cc=0.425) | info on Rv2222c/glnA2 |
| Rv1673c/- | (cc=0.4228) | info on Rv1673c/- |
| Rv3223c/sigH | (cc=0.4148) | info on Rv3223c/sigH |
| Rv1970/lprM | (cc=0.4134) | info on Rv1970/lprM |
| Rv2425c/- | (cc=0.4131) | info on Rv2425c/- |
| Rv2317/uspB | (cc=0.4063) | info on Rv2317/uspB |
| Rv2786c/ribF | (cc=0.4061) | info on Rv2786c/ribF |
| Rv2673/aftC | (cc=0.395) | info on Rv2673/aftC |
Correlation of Rv2541/- with Rv0959A/vapB9
Normalized LFCs for Rv2541/-:
(description and provenance of datasets)
| Rv2541/- | Rv0959A/vapB9 | |
| Fe_supp_jason_reseq | 1.023 | -1.263 |
| low_pH_jason_reseq | -2.652 | -1.832 |
| NO_jason_reseq | -2.381 | -0.837 |
| B6_jason_reseq | -0.111 | -0.397 |
| MHCII_jason_reseq | -1.549 | 0.039 |
| Isoniazid02 | 0.521 | 1.587 |
| Rifampicin4 | 0.195 | 1.435 |
| Ethambutol3 | 0.13 | 1.806 |
| Meropenem3 | -0.138 | 2.197 |
| Vancomycin16 | 0.284 | 1.406 |
| Rv2680_day32 | 0.0 | -0.37 |
| H37Rv_KO_MarP | 0.309 | -0.518 |
| hypoxia_3wks | -1.623 | -0.128 |
| hypoxia_6wks | -1.934 | -0.631 |
| glycerol | -1.463 | -0.228 |
| cholesterol | -0.435 | -0.47 |
| AJ | -0.393 | 1.027 |
| Bibs02 | 1.325 | -0.54 |
| Bibs02c | -1.516 | -1.132 |
| BL6 | -0.212 | 0.12 |
| BL6a | -0.218 | -0.354 |
| BXD01 | 0.944 | 1.406 |
| BXD010 | -0.684 | -0.166 |
| BXD011 | 0.065 | -0.085 |
| BXD03 | 0.87 | 0.696 |
| BXD04 | 1.105 | 0.166 |
| BXD05 | 0.135 | -0.208 |
| BXD06 | 0.133 | 0.292 |
| BXD07 | 0.203 | 0.02 |
| BXD08 | 0.467 | 0.714 |
| BXD09 | -0.075 | 0.266 |
| CAST | 1.668 | -1.331 |
| CCcont | 0.41 | 0.219 |
| DS01 | -1.711 | -0.934 |
| DS02 | 1.459 | -0.282 |
| DS04 | -1.405 | -1.003 |
| DS0c | 0.919 | 0.193 |
| GP01 | 1.099 | 0.007 |
| GP02 | 0.261 | -0.055 |
| GP0c | 2.634 | 0.575 |
| NOD | 0.617 | 0.171 |
| NZO | 1.691 | 0.718 |
| PWK | 1.147 | -0.131 |
| H37Rv_KO_CtpC | 5.797 | 0.42 |
| H37Rv_KO_CtpD | -0.139 | -1.558 |
| H37Rv_KO_Rv1272 | -0.881 | 1.051 |
| H37Rv_KO_SugABC | -0.718 | -2.058 |
| H37Rv_KO_MbtN | 0.719 | 0.856 |
| Trans05 | 2.946 | 1.44 |
| macrophage_unactivated | -0.48 | -0.994 |
| IL1 | -2.186 | -0.664 |
| Rapamycin | -0.988 | -0.488 |
| Tcell | 1.906 | -0.283 |
| GMCSF | -0.618 | -2.519 |
| IFNab | -0.46 | -1.599 |
| IFNg | -2.673 | -0.97 |
| IFNg_GMCSF1 | -2.709 | -2.771 |
| Rv1432_day32 | -0.713 | 0.296 |
| Rv1565c_day32 | -0.123 | -0.599 |
| secA2_input | 1.722 | 2.087 |
| delta_Rv3594 | 1.53 | 0.895 |
| delta_Rv3717 | 1.49 | 0.311 |
| delta_Rv3811 | 2.698 | -0.784 |
| delta_Rv0954 | 0.11 | -0.368 |
| PonA1 | -1.829 | -4.163 |
| EccD1_KO | 3.44 | 0.039 |
| EspI_KO | 1.346 | 1.868 |
| PE35_KO | 3.366 | 1.021 |
| PPE68_KO | 2.646 | 0.646 |
| glycerol2 | -0.696 | -0.043 |
| lignocerate | 0.037 | 0.362 |
| oleate | -0.179 | 0.31 |
| phosphatidylcholine | 0.122 | 0.321 |
| acetate | 1.453 | -0.392 |
| glucAc | -0.096 | -0.267 |
| Rv0950ko | 0.0 | -0.341 |
| Rv1096ko | -0.718 | 1.053 |
| Rv3684ko | -0.779 | -1.045 |
| delta_otsA_trehalose | 0.818 | 0.122 |