Top 10 genes with highest correlation to Rv2088/pknJ:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0833/PE_PGRS13 | (cc=0.5203) | info on Rv0833/PE_PGRS13 |
| Rv1728c/- | (cc=0.4917) | info on Rv1728c/- |
| Rv1452c/PE_PGRS28 | (cc=0.4782) | info on Rv1452c/PE_PGRS28 |
| Rv3513c/fadD18 | (cc=0.4742) | info on Rv3513c/fadD18 |
| Rv2022c/- | (cc=0.4738) | info on Rv2022c/- |
| Rv3144c/PPE52 | (cc=0.4645) | info on Rv3144c/PPE52 |
| Rv1781c/malQ | (cc=0.4592) | info on Rv1781c/malQ |
| Rv1245c/- | (cc=0.4545) | info on Rv1245c/- |
| Rv3507/PE_PGRS53 | (cc=0.4533) | info on Rv3507/PE_PGRS53 |
| Rv1004c/- | (cc=0.453) | info on Rv1004c/- |
Correlation of Rv2088/pknJ with Rv1452c/PE_PGRS28
Normalized LFCs for Rv2088/pknJ:
(description and provenance of datasets)
| Rv2088/pknJ | Rv1452c/PE_PGRS28 | |
| Fe_supp_jason_reseq | -0.822 | -0.046 |
| low_pH_jason_reseq | 0.0 | -0.765 |
| NO_jason_reseq | -0.32 | -0.396 |
| B6_jason_reseq | -0.171 | -0.24 |
| MHCII_jason_reseq | 0.479 | 0.75 |
| Isoniazid02 | -0.02 | 1.064 |
| Rifampicin4 | 0.463 | 0.636 |
| Ethambutol3 | -0.179 | 0.911 |
| Meropenem3 | 0.307 | 1.12 |
| Vancomycin16 | 0.584 | 0.027 |
| Rv2680_day32 | 0.407 | -0.669 |
| H37Rv_KO_MarP | -0.522 | -0.555 |
| hypoxia_3wks | 0.73 | 0.0 |
| hypoxia_6wks | -0.255 | -0.411 |
| glycerol | 0.206 | 1.849 |
| cholesterol | 0.233 | 0.649 |
| AJ | 0.237 | 1.04 |
| Bibs02 | -0.101 | 1.558 |
| Bibs02c | 0.905 | 1.122 |
| BL6 | -0.555 | 0.057 |
| BL6a | 0.386 | 0.462 |
| BXD01 | -0.187 | 0.149 |
| BXD010 | 0.083 | -0.125 |
| BXD011 | -0.07 | 0.306 |
| BXD03 | -0.036 | 0.132 |
| BXD04 | -0.033 | 0.1 |
| BXD05 | 0.201 | 0.667 |
| BXD06 | 0.275 | -0.187 |
| BXD07 | 0.285 | 0.323 |
| BXD08 | -0.512 | 0.34 |
| BXD09 | 0.193 | 0.039 |
| CAST | 0.782 | 0.719 |
| CCcont | -0.757 | -0.325 |
| DS01 | -0.339 | 0.31 |
| DS02 | -0.345 | 0.474 |
| DS04 | 0.659 | 1.313 |
| DS0c | 0.113 | -0.041 |
| GP01 | 0.735 | 0.825 |
| GP02 | 1.395 | 1.219 |
| GP0c | 0.209 | 1.25 |
| NOD | 0.807 | 1.396 |
| NZO | -0.166 | 0.595 |
| PWK | 0.0 | 0.192 |
| H37Rv_KO_CtpC | -0.022 | 0.993 |
| H37Rv_KO_CtpD | 0.829 | 1.665 |
| H37Rv_KO_Rv1272 | 0.841 | -0.095 |
| H37Rv_KO_SugABC | 1.222 | 0.531 |
| H37Rv_KO_MbtN | -0.458 | 0.843 |
| Trans05 | 0.698 | 0.095 |
| macrophage_unactivated | -0.514 | -0.028 |
| IL1 | -0.116 | 0.05 |
| Rapamycin | -0.632 | -0.276 |
| Tcell | -0.531 | -0.74 |
| GMCSF | 0.246 | 0.734 |
| IFNab | -0.302 | -0.656 |
| IFNg | -0.104 | -0.048 |
| IFNg_GMCSF1 | 0.06 | -0.057 |
| Rv1432_day32 | 0.559 | 0.754 |
| Rv1565c_day32 | -0.09 | -0.635 |
| secA2_input | -1.257 | -0.653 |
| delta_Rv3594 | 0.635 | -0.217 |
| delta_Rv3717 | 0.341 | 0.477 |
| delta_Rv3811 | 0.287 | -0.125 |
| delta_Rv0954 | -0.394 | -0.667 |
| PonA1 | 0.223 | -0.299 |
| EccD1_KO | -0.51 | 0.724 |
| EspI_KO | -0.171 | -0.345 |
| PE35_KO | -0.044 | 0.079 |
| PPE68_KO | -0.048 | -0.202 |
| glycerol2 | -0.09 | -0.581 |
| lignocerate | -0.407 | -0.567 |
| oleate | 0.384 | -0.345 |
| phosphatidylcholine | 0.0 | -0.164 |
| acetate | -0.427 | -0.982 |
| glucAc | -0.823 | 0.026 |
| Rv0950ko | 0.326 | 0.042 |
| Rv1096ko | 0.953 | 0.223 |
| Rv3684ko | 0.403 | -0.255 |
| delta_otsA_trehalose | -1.715 | -1.019 |