Top 10 genes with highest correlation to Rv2088/pknJ:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0833/PE_PGRS13 | (cc=0.5203) | info on Rv0833/PE_PGRS13 |
| Rv1728c/- | (cc=0.4917) | info on Rv1728c/- |
| Rv1452c/PE_PGRS28 | (cc=0.4782) | info on Rv1452c/PE_PGRS28 |
| Rv3513c/fadD18 | (cc=0.4742) | info on Rv3513c/fadD18 |
| Rv2022c/- | (cc=0.4738) | info on Rv2022c/- |
| Rv3144c/PPE52 | (cc=0.4645) | info on Rv3144c/PPE52 |
| Rv1781c/malQ | (cc=0.4592) | info on Rv1781c/malQ |
| Rv1245c/- | (cc=0.4545) | info on Rv1245c/- |
| Rv3507/PE_PGRS53 | (cc=0.4533) | info on Rv3507/PE_PGRS53 |
| Rv1004c/- | (cc=0.453) | info on Rv1004c/- |
Correlation of Rv2088/pknJ with Rv0833/PE_PGRS13
Normalized LFCs for Rv2088/pknJ:
(description and provenance of datasets)
| Rv2088/pknJ | Rv0833/PE_PGRS13 | |
| Fe_supp_jason_reseq | -0.822 | -0.923 |
| low_pH_jason_reseq | 0.0 | -0.284 |
| NO_jason_reseq | -0.32 | 0.205 |
| B6_jason_reseq | -0.171 | -0.52 |
| MHCII_jason_reseq | 0.479 | -0.694 |
| Isoniazid02 | -0.02 | 0.469 |
| Rifampicin4 | 0.463 | 0.872 |
| Ethambutol3 | -0.179 | 0.27 |
| Meropenem3 | 0.307 | 0.0 |
| Vancomycin16 | 0.584 | 0.589 |
| Rv2680_day32 | 0.407 | -0.082 |
| H37Rv_KO_MarP | -0.522 | -0.525 |
| hypoxia_3wks | 0.73 | 0.706 |
| hypoxia_6wks | -0.255 | -0.274 |
| glycerol | 0.206 | 0.686 |
| cholesterol | 0.233 | 0.574 |
| AJ | 0.237 | 1.771 |
| Bibs02 | -0.101 | 0.621 |
| Bibs02c | 0.905 | 1.678 |
| BL6 | -0.555 | -0.104 |
| BL6a | 0.386 | 0.993 |
| BXD01 | -0.187 | 0.101 |
| BXD010 | 0.083 | 0.928 |
| BXD011 | -0.07 | 0.0 |
| BXD03 | -0.036 | 1.084 |
| BXD04 | -0.033 | 0.793 |
| BXD05 | 0.201 | 0.377 |
| BXD06 | 0.275 | 0.199 |
| BXD07 | 0.285 | 0.301 |
| BXD08 | -0.512 | 0.452 |
| BXD09 | 0.193 | 0.305 |
| CAST | 0.782 | 0.782 |
| CCcont | -0.757 | -0.124 |
| DS01 | -0.339 | -0.412 |
| DS02 | -0.345 | 0.0 |
| DS04 | 0.659 | 0.0 |
| DS0c | 0.113 | -0.379 |
| GP01 | 0.735 | 1.185 |
| GP02 | 1.395 | 2.978 |
| GP0c | 0.209 | 1.594 |
| NOD | 0.807 | 1.884 |
| NZO | -0.166 | 0.298 |
| PWK | 0.0 | 0.426 |
| H37Rv_KO_CtpC | -0.022 | 0.353 |
| H37Rv_KO_CtpD | 0.829 | 0.635 |
| H37Rv_KO_Rv1272 | 0.841 | 0.479 |
| H37Rv_KO_SugABC | 1.222 | -0.272 |
| H37Rv_KO_MbtN | -0.458 | -0.283 |
| Trans05 | 0.698 | 0.588 |
| macrophage_unactivated | -0.514 | -0.783 |
| IL1 | -0.116 | -1.967 |
| Rapamycin | -0.632 | -1.679 |
| Tcell | -0.531 | -1.782 |
| GMCSF | 0.246 | -0.422 |
| IFNab | -0.302 | -2.382 |
| IFNg | -0.104 | -0.911 |
| IFNg_GMCSF1 | 0.06 | -1.071 |
| Rv1432_day32 | 0.559 | 0.661 |
| Rv1565c_day32 | -0.09 | -1.054 |
| secA2_input | -1.257 | -0.861 |
| delta_Rv3594 | 0.635 | 0.0 |
| delta_Rv3717 | 0.341 | -0.508 |
| delta_Rv3811 | 0.287 | -0.149 |
| delta_Rv0954 | -0.394 | -1.333 |
| PonA1 | 0.223 | 0.451 |
| EccD1_KO | -0.51 | 0.49 |
| EspI_KO | -0.171 | 0.26 |
| PE35_KO | -0.044 | -0.283 |
| PPE68_KO | -0.048 | -0.205 |
| glycerol2 | -0.09 | -0.392 |
| lignocerate | -0.407 | -0.613 |
| oleate | 0.384 | -0.397 |
| phosphatidylcholine | 0.0 | -0.253 |
| acetate | -0.427 | 0.507 |
| glucAc | -0.823 | 0.165 |
| Rv0950ko | 0.326 | 0.621 |
| Rv1096ko | 0.953 | 1.08 |
| Rv3684ko | 0.403 | 0.462 |
| delta_otsA_trehalose | -1.715 | 0.0 |