Top 10 genes with highest correlation to Rv2042c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2270/lppN | (cc=0.5706) | info on Rv2270/lppN |
| Rv1975/- | (cc=0.5413) | info on Rv1975/- |
| Rv2296/- | (cc=0.5277) | info on Rv2296/- |
| Rv1064c/lpqV | (cc=0.5272) | info on Rv1064c/lpqV |
| Rv2087/- | (cc=0.515) | info on Rv2087/- |
| Rv2089c/pepE | (cc=0.5119) | info on Rv2089c/pepE |
| Rv3017c/esxQ | (cc=0.5001) | info on Rv3017c/esxQ |
| Rv3189/- | (cc=0.4847) | info on Rv3189/- |
| Rv0053/rpsF | (cc=0.4828) | info on Rv0053/rpsF |
| Rv2273/- | (cc=0.4597) | info on Rv2273/- |
Correlation of Rv2042c/- with Rv2270/lppN
Normalized LFCs for Rv2042c/-:
(description and provenance of datasets)
| Rv2042c/- | Rv2270/lppN | |
| Fe_supp_jason_reseq | 0.688 | 0.71 |
| low_pH_jason_reseq | 0.137 | -0.323 |
| NO_jason_reseq | -0.055 | -0.318 |
| B6_jason_reseq | -0.072 | 0.63 |
| MHCII_jason_reseq | 0.315 | -0.077 |
| Isoniazid02 | 0.02 | -0.26 |
| Rifampicin4 | 0.384 | 0.401 |
| Ethambutol3 | 2.783 | -0.185 |
| Meropenem3 | 0.063 | 0.398 |
| Vancomycin16 | 0.313 | 0.096 |
| Rv2680_day32 | 0.0 | 0.184 |
| H37Rv_KO_MarP | 0.272 | 0.459 |
| hypoxia_3wks | 0.064 | -0.315 |
| hypoxia_6wks | -0.351 | -0.031 |
| glycerol | 0.942 | 0.553 |
| cholesterol | 0.589 | -0.164 |
| AJ | 1.044 | -0.629 |
| Bibs02 | 1.056 | -1.25 |
| Bibs02c | 0.831 | 0.638 |
| BL6 | 0.211 | -1.299 |
| BL6a | -0.053 | -0.033 |
| BXD01 | -0.283 | -0.933 |
| BXD010 | -0.629 | 0.595 |
| BXD011 | -0.626 | 0.081 |
| BXD03 | -1.535 | -1.289 |
| BXD04 | 0.078 | -0.581 |
| BXD05 | 1.035 | 0.086 |
| BXD06 | -0.269 | -0.435 |
| BXD07 | -0.112 | -0.222 |
| BXD08 | 0.391 | -0.931 |
| BXD09 | -0.018 | -0.184 |
| CAST | 0.362 | -0.324 |
| CCcont | -0.898 | -1.924 |
| DS01 | 0.178 | -0.058 |
| DS02 | -0.147 | -0.246 |
| DS04 | -0.391 | -0.505 |
| DS0c | 0.528 | -0.284 |
| GP01 | -0.053 | -0.614 |
| GP02 | 0.277 | -0.102 |
| GP0c | -0.22 | -0.734 |
| NOD | 0.661 | 0.805 |
| NZO | 0.485 | -0.964 |
| PWK | 0.374 | 0.033 |
| H37Rv_KO_CtpC | 0.361 | 0.104 |
| H37Rv_KO_CtpD | 0.806 | -0.251 |
| H37Rv_KO_Rv1272 | 0.018 | 0.998 |
| H37Rv_KO_SugABC | -1.488 | 0.159 |
| H37Rv_KO_MbtN | 0.283 | -0.597 |
| Trans05 | 0.161 | 0.103 |
| macrophage_unactivated | 1.348 | -0.376 |
| IL1 | 0.353 | 0.273 |
| Rapamycin | 0.703 | -0.761 |
| Tcell | 0.534 | -0.124 |
| GMCSF | 0.771 | -0.597 |
| IFNab | 0.29 | -0.057 |
| IFNg | 0.834 | 0.43 |
| IFNg_GMCSF1 | 1.225 | 0.346 |
| Rv1432_day32 | -0.703 | 0.621 |
| Rv1565c_day32 | 0.531 | -1.199 |
| secA2_input | -0.163 | -1.276 |
| delta_Rv3594 | 1.234 | 1.115 |
| delta_Rv3717 | 1.377 | 0.203 |
| delta_Rv3811 | 1.382 | 1.715 |
| delta_Rv0954 | -0.074 | 0.048 |
| PonA1 | 0.447 | -0.235 |
| EccD1_KO | 1.154 | 1.579 |
| EspI_KO | 2.116 | 1.845 |
| PE35_KO | 1.896 | 3.106 |
| PPE68_KO | 2.56 | 3.318 |
| glycerol2 | 0.073 | -1.544 |
| lignocerate | -0.829 | -2.176 |
| oleate | 0.36 | -1.198 |
| phosphatidylcholine | -0.409 | -1.751 |
| acetate | -1.24 | -2.622 |
| glucAc | -1.571 | -2.001 |
| Rv0950ko | 1.339 | 0.464 |
| Rv1096ko | 0.0 | -0.341 |
| Rv3684ko | 0.318 | -0.144 |
| delta_otsA_trehalose | -1.136 | 0.272 |